BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4656.p
         (330 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096159|ref|YP_001101234.1| lipoyl synthase [Herminiimonas ...   590   e-170

>gi|134096159|ref|YP_001101234.1| lipoyl synthase [Herminiimonas
           arsenicoxydans]
          Length = 335

 Score =  590 bits (1520), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 282/330 (85%), Positives = 297/330 (90%), Gaps = 4/330 (1%)

Query: 1   MTTELTPAADSSSNATGSARANPLDKQKGAGKTAWIPIKVVAAEKLKKPDWIRVKAGSPT 60
           MT +  P + + S    +   NP +KQKG+ KT  IPIKVV  E+L KPDWIRVKAGSP+
Sbjct: 1   MTIDTNPESSTPS----APAYNPSEKQKGSAKTIRIPIKVVPMERLPKPDWIRVKAGSPS 56

Query: 61  TRFYEIKDILRSNNLVTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPD 120
           TRFYEIKDILR+NNLVTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPD
Sbjct: 57  TRFYEIKDILRANNLVTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPD 116

Query: 121 PLDPNEPENLAKTIAQLRLSYVVITSVDRDDLRDGGAAHFAACIQRVRELSPETRIEILT 180
           PLD NEPENLAKTIA LRL+YVVITSVDRDDLRDGGA HFA CI+RVRELSP TRIEIL 
Sbjct: 117 PLDVNEPENLAKTIAALRLNYVVITSVDRDDLRDGGAGHFAECIRRVRELSPNTRIEILV 176

Query: 181 PDFRGRMDRALEILKMAPPDVMNHNLETAPRLYKEARPGSDYEYSLSLLKRFKDLHPEVP 240
           PDFRGRMDRALEIL +APPDVMNHNLETAPRLYKEARPGSDY YSL+LLKRFK LHP  P
Sbjct: 177 PDFRGRMDRALEILNLAPPDVMNHNLETAPRLYKEARPGSDYAYSLNLLKRFKALHPNTP 236

Query: 241 TKSGIMVGLGETDEEVLQVMRDMRAHNVDMLTIGQYLMPSGDHLPVRRYVHPDTFKMYEE 300
           TKSGIMVGLGETDEEVLQVMRDMRAH+VDMLTIGQYLMPSGDHLPVRRYVHPDTFKMYEE
Sbjct: 237 TKSGIMVGLGETDEEVLQVMRDMRAHDVDMLTIGQYLMPSGDHLPVRRYVHPDTFKMYEE 296

Query: 301 EAYKMGFVHAAVGAMVRSSYHADQQAHGLV 330
           EAYKMGF HAAVGAMVRSSYHADQQAHG+ 
Sbjct: 297 EAYKMGFAHAAVGAMVRSSYHADQQAHGVT 326


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 654,967
Number of extensions: 27161
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 248
Effective length of database: 730,157
Effective search space: 181078936
Effective search space used: 181078936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)