BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4654.p (472 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095838|ref|YP_001100913.1| succinate-semialdehyde dehydrog... 152 4e-38 gi|134095327|ref|YP_001100402.1| multifunctional: transcriptiona... 112 4e-26 gi|134096568|ref|YP_001101643.1| methylmalonate-semialdehyde deh... 97 2e-21 >gi|134095838|ref|YP_001100913.1| succinate-semialdehyde dehydrogenase I, NADP-dependent [Herminiimonas arsenicoxydans] Length = 492 Score = 152 bits (383), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 107/345 (31%), Positives = 169/345 (48%), Gaps = 20/345 (5%) Query: 107 LAQPLGVVGIISPWNYPLQLALGPALAALAAGNRVLLKPSELTPLLSALLAELVARYYAP 166 + QP+G+ I+PWN+P+ + A+AAG +++KP+E TPL + +AEL R P Sbjct: 149 IKQPIGICAAITPWNFPIAMITRKVAPAVAAGCTIVIKPAEQTPLSALAIAELAHRAGLP 208 Query: 167 EE-MAVVTGDAR----IGQAFAALPL-DHLFFTGSTQVGRQVAQLAAANLTPVTLELGGK 220 + V+T DA +G+ A P+ H+ FTGST VGR + + A + + LELGG Sbjct: 209 AGVINVITADAENSIVVGKTLCASPIVRHVSFTGSTPVGRILMEQCAPTVKKIALELGGH 268 Query: 221 SPAILDASCHLESSIRRIAFGKLLNAGQTCVAPDYLLVPRGQAPVVAQRLAQAMSALYPR 280 +P I+ L++++ K NAGQTCV + V V Q+LA + R Sbjct: 269 APFIVFDDADLDAAVTGALQSKYRNAGQTCVCTNRFYVHESIYDVFVQKLAAGAA----R 324 Query: 281 LHDNPDYTA------IISARHRERLLALVQQARAAGAQVIEVNPAQEDLGHSRKLAPMLI 334 + + +I + ++ V A GA V+ GH + P ++ Sbjct: 325 IKVGNGFEQGVLQGPLIDDQAIRKVEQHVSDAVKKGASVMTGGKKHALGGHFYE--PTVL 382 Query: 335 LGATTAMQVMQEEIFGPLLPILEYDALEDAIAHVRQGPRPLALYWFGQDAARRDRVLRQT 394 T M +M EE FGP+ I+++ ++AIA LA Y++ +D +R RV + Sbjct: 383 SNITDDMSIMHEETFGPVAAIVKFKTEDEAIAAANNTDFGLASYFYARDISRVWRVAEKL 442 Query: 395 HAGGVTINDCLWHLVQEEQPFGGVGESGMGAYHGRWGFDTFSKRK 439 G V IN L + E PFGGV +SG+G ++G D + + K Sbjct: 443 EYGMVGINTGL--ISNEVAPFGGVKQSGLGREGSKYGIDEYLEIK 485 >gi|134095327|ref|YP_001100402.1| multifunctional: transcriptional repressor of proline utilization; proline dehydrogenase; pyrroline-5-carboxylate dehydrogenase [Herminiimonas arsenicoxydans] Length = 1224 Score = 112 bits (280), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 104/337 (30%), Positives = 154/337 (45%), Gaps = 20/337 (5%) Query: 107 LAQPLGVVGIISPWNYPLQLALGPALAALAAGNRVLLKPSELTPLLSALLAELVARYYAP 166 + Q LG+V ISPWN+PL + G AALAAGN VL KP+E TPL++ +L+ + P Sbjct: 681 MEQALGLVACISPWNFPLSIFTGQLSAALAAGNAVLAKPAEQTPLIAFRAVQLMHQAGVP 740 Query: 167 EEMAVVT---GDARIGQAFAALPLDHLFFTGSTQVG----RQVAQ--LAAANLTPVTLEL 217 E++ + G Q A + + FTGSTQV R +AQ +A P+ E Sbjct: 741 EDVLLFLPGRGQTTGAQLVADARVSGVVFTGSTQVATIIHRTLAQRSMAERRDIPLIAET 800 Query: 218 GGKSPAILDASCHLESSIRRIAFGKLLNAGQTCVAPDYLLVPRGQAPVVAQRLAQAMSAL 277 GG++ I+D+S E +R + +AGQ C A L + A L A L Sbjct: 801 GGQNAMIVDSSALCEQVVRDVIASAFDSAGQRCSALRVLCLQTDIAEKTLNMLHGAFEEL 860 Query: 278 YPRLHDN--PDYTAIISARHRERLLALVQQA--RAAGAQVIEVNPAQEDLGHSRKLAPML 333 D D +I A ++ L A ++QA RA + + + P+ G +AP + Sbjct: 861 QTGRPDQLATDVGPVIDAEAQQHLRAYIEQAGRRAKNMKQLAL-PSTGTQG--TFVAPCI 917 Query: 334 ILGATTAMQVMQEEIFGPLLPILEY--DALEDAIAHVRQGPRPLALYWFGQDAARRDRVL 391 I M +Q E+FGP+L +L Y D L + + L L + + ++ Sbjct: 918 I--EIDRMSDLQREVFGPVLHVLRYRRDDLPQLVRDINATGFGLTLGVHSRIDETINYIV 975 Query: 392 RQTHAGGVTINDCLWHLVQEEQPFGGVGESGMGAYHG 428 G + +N + V QPFGG G SG G G Sbjct: 976 DHARVGNIYVNRNIIGAVVGVQPFGGEGLSGTGPKAG 1012 >gi|134096568|ref|YP_001101643.1| methylmalonate-semialdehyde dehydrogenase, oxidoreductase protein [Herminiimonas arsenicoxydans] Length = 506 Score = 96.7 bits (239), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 99/368 (26%), Positives = 159/368 (43%), Gaps = 39/368 (10%) Query: 104 NRLLAQPLGVVGIISPWNYPLQLALGPALAALAAGNRVLLKPSELTPLLSALLAELVARY 163 N L QPLGV I+P+N+P + + A ALA GN +LKPSE P S ++AEL+ + Sbjct: 138 NWNLRQPLGVTAGITPFNFPFMVPMWMAPVALATGNTFILKPSERDPSPSLMVAELLHQA 197 Query: 164 YAPEEM-AVVTGDARIGQAFAALP-LDHLFFTGSTQVGRQVAQLAAANLTPVTLEL---- 217 P+ + V+ GD R P + + F GST + + Q AA L + Sbjct: 198 GLPDGVFNVLQGDKRAVDGLLQHPDIKAVSFVGSTPIAEYIYQAGAARKGSYPLRVQALG 257 Query: 218 GGKSPAILDASCHLESSIRRIAFGKLLNAGQTCVAPDYLLVPRGQAPVVAQRLAQAMSAL 277 G K+ ++ +LE ++ + +AG+ C+A + V G VA +L ++AL Sbjct: 258 GAKNHLVVMPDANLEQAVDALIGAAYGSAGERCMAIS-VAVAVGS---VADKL---VAAL 310 Query: 278 YPR---------LHDNPDYTAIISARHRERLLALVQQARAAGAQVIEVNPAQEDLGHSRK 328 PR + + + ++SA H+ ++ ++ +GA+++ GHS Sbjct: 311 IPRVKSLKVKNGMESDAEMGPVVSAAHKAKIEGYIEAGIKSGAKLLVDGRGLTVDGHSNG 370 Query: 329 --LAPMLILGATTAMQVMQEEIFGPLLPILEYDALEDAIAHVRQGPRPLALYWFGQDAAR 386 L L T M + QEEIFGP+L ++ A+ + + F D Sbjct: 371 FFLGGCLFDNVTPEMTIYQEEIFGPVLCVVRVPDFSAALDLINAHEFGNGVALFTSDGNT 430 Query: 387 RDRVLRQTHAGGVTINDCL-----WHLVQEEQPFGGVGESGMGAYH--GRWGFDTFSKRK 439 R+ G V IN + WH FGG S G H G G +++ K Sbjct: 431 AREFSRRVEIGMVGINVPIPVPMAWH------SFGGWKRSMFGDTHAYGEEGIKFYTRYK 484 Query: 440 PVFRQARW 447 + + RW Sbjct: 485 SIMQ--RW 490 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.137 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 818,745 Number of extensions: 32558 Number of successful extensions: 99 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 92 Number of HSP's successfully gapped: 3 Length of query: 472 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 387 Effective length of database: 720,272 Effective search space: 278745264 Effective search space used: 278745264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)