BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4651.p
         (228 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093823|ref|YP_001098898.1| GTP cyclohydrolase II [Herminii...   297   2e-82

>gi|134093823|ref|YP_001098898.1| GTP cyclohydrolase II
           [Herminiimonas arsenicoxydans]
          Length = 211

 Score =  297 bits (761), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 139/193 (72%), Positives = 159/193 (82%)

Query: 15  KLVFVSSCKLPMPWATFELHAFYDEVSGKEHLALTLGEVGNGEPVLGRVHSECLTGDALF 74
           +L +V+SC+LPMPWA F LHAF +  +GKEH+A+TLG+V NGEPVL R+HSECLTGDALF
Sbjct: 19  ELDYVASCELPMPWAKFRLHAFTEPATGKEHVAITLGDVANGEPVLARIHSECLTGDALF 78

Query: 75  SQRCDCGAQLEAALKKIAKEGRGVLFYLRQEGRGIGLLNKIRAYHLQDQGADTVEANERL 134
           S RCDCG QLEAAL+KIA+EGRG LFYLRQEGRGIGL+NKIRAY LQD GADTVEANE L
Sbjct: 79  SLRCDCGPQLEAALQKIAEEGRGALFYLRQEGRGIGLVNKIRAYQLQDAGADTVEANEAL 138

Query: 135 GFPADMRRYTIVLPMLAHLKITSLRLMTNNPRKVKALEDSGITVAERIALIANHNPFNIG 194
           GF  D R Y + LPML HLKI+SLRLMTNNPRK+ A+E  G+ V ER+ L+  HNPFN  
Sbjct: 139 GFKPDQRNYRLCLPMLQHLKISSLRLMTNNPRKITAMEQLGLKVVERVPLVITHNPFNER 198

Query: 195 YLGTKARKLGHLL 207
           YL TKA KLGHL 
Sbjct: 199 YLATKAGKLGHLF 211


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 455,016
Number of extensions: 18551
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 149
Effective length of database: 740,042
Effective search space: 110266258
Effective search space used: 110266258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)