BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4650.p
         (389 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095845|ref|YP_001100920.1| putative CobW protein involved ...   222   3e-59
gi|134096117|ref|YP_001101192.1| hypothetical protein HEAR2959 [...   216   2e-57

>gi|134095845|ref|YP_001100920.1| putative CobW protein involved in
           cobalamin synthesis [Herminiimonas arsenicoxydans]
          Length = 382

 Score =  222 bits (565), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 133/379 (35%), Positives = 204/379 (53%), Gaps = 21/379 (5%)

Query: 12  IPVSLLTGFLGSGKTTLLNHLITQPEMKNTLVIINEFGEIGLDHLLMAHSQEDTVVEMSS 71
           IP++LLTGFLGSGKTTL+NH+++ P+     VI+NEFG+IG+D  L+  + ED ++EMS+
Sbjct: 14  IPITLLTGFLGSGKTTLVNHILSAPDSGKIAVIVNEFGDIGIDGDLITKASED-MLEMSN 72

Query: 72  GCLCCTIRGDLKKTLKDITWRFAEGGQRK--FDRVVIETTGLASPTPILHTLMTDPFIAA 129
           GC+CC  + DL ++L  +  R A   + K  FDR++IETTGLA PTP+     TD  ++ 
Sbjct: 73  GCICCASKDDLMESLYKLYMRRAGLIEPKIEFDRILIETTGLADPTPLAQAFYTDMSLSL 132

Query: 130 RYRLDGVIVTVDAVNGMSTLDHHPEAIQQAAVADRLLLTKTDLADAATLAALQARLRTLN 189
            YRLD +I  VD  + +       EA +Q A+AD+++  K DL   A  A   A +  LN
Sbjct: 133 TYRLDAIITMVDIKHVVMQTGETMEAQRQLAMADKIIFNKRDLVSDAEYANAIAVVNALN 192

Query: 190 PGARQLQPQLGQIAAAELLDAGLFKPGEKMPDVARWLNEEAFAEQ-QAHAHEHHHHGHDH 248
           P + +     G++ A+ L+D  LF P  K   +A W+     A Q + H   HH  G D 
Sbjct: 193 PMSPKETTSYGKLDASRLIDLNLFDPNVKETAIADWIGLHVEAPQVEHHHDHHHADGKDC 252

Query: 249 H---DHHDHGHAHHEHHDHHDHAHDVNRHDDHIRAFCFTFDEPIDPVLFDEWLSLLVGFK 305
           H     HDH H H  H           +H D I +       P+D     ++L  L+   
Sbjct: 253 HVCNAGHDHAHGHVSH-----------KHLDGISSVSMRQQYPLDYQKVMQFLDRLITQH 301

Query: 306 GPNILRIKGILNLKGDDKPTVIHGVQHIFHPTATLPEWPSEDRRSRIVFITRDIERATIE 365
           G N+ R+KG++  +G  +P ++ GVQ +F P     +WP     +R+V I + I++  ++
Sbjct: 302 GNNLYRVKGLMQFRGISQPVILQGVQTVFSPLTYAEKWPEGKMETRLVIIGKHIDKHQMQ 361

Query: 366 RSFDAFMQAQAIEREARER 384
              + F Q  A++    +R
Sbjct: 362 ---EEFAQCVAVDETVLDR 377


>gi|134096117|ref|YP_001101192.1| hypothetical protein HEAR2959
           [Herminiimonas arsenicoxydans]
          Length = 349

 Score =  216 bits (550), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 135/354 (38%), Positives = 194/354 (54%), Gaps = 16/354 (4%)

Query: 10  APIPVSLLTGFLGSGKTTLLNHLITQPEMKNTLVIINEFGEIGLDHLLMAHSQEDTVVEM 69
           A IP ++LTGFLG+GKTTLLN ++ +P      VI NEFG+  +D+ ++     + +VEM
Sbjct: 2   ALIPTTILTGFLGAGKTTLLNRILQEPHGFKIAVIENEFGQENIDNEILVQDGTEQIVEM 61

Query: 70  SSGCLCCTIRGDLKKTLKDITWRFAEGGQRKFDRVVIETTGLASPTPILHTLMTDPFIAA 129
           ++GC+CCT+RGDL   L  +  R  +G + +FD VVIETTGLA+P P+  T   D  +A 
Sbjct: 62  NNGCICCTVRGDLIVALTALAQRRRDG-ELQFDHVVIETTGLANPGPVAQTFFIDEEVAI 120

Query: 130 RYRLDGVIVTVDAVNGMSTLDHHPEAIQQAAVADRLLLTKTDLADAATLAALQARLRTLN 189
            Y +D +I  VDA + M  LD + EA +Q   AD+LLL+KTDL  A  LA L  R++ +N
Sbjct: 121 DYLVDAIITVVDAKHAMHQLDTYEEAQRQIGFADKLLLSKTDLVSADELAILIERIKRIN 180

Query: 190 PGARQLQPQLGQIAAAELLDAGLFKPGEKMPDVARWLNEEAFAEQQAHAHEHHHHGHDHH 249
           P A       G++A A++LD   F   +K+      L+ +  A     A EH H  HDH 
Sbjct: 181 PRAPVSTADFGRVAIADVLDLRGFNLNDKLE-----LDPDFIA-----AQEHEHAQHDH- 229

Query: 250 DHHDHGHAHHEHHDHHDHAHDVNRHDDHIRAFCFTFDEPIDPVLFDEWLSLLVGFKGPNI 309
                   H      H H H  + H D+I AF F  + P +    DE+L  +V   GP +
Sbjct: 230 ----ACETHCTQDHEHTHDHHHSHHSDNIAAFVFKSERPFNTEKLDEFLGSIVQVFGPRM 285

Query: 310 LRIKGILNLKGDDKPTVIHGVQHIFHPTATLPEWPSEDRRSRIVFITRDIERAT 363
           LR KG+L + G D+  V  GV  I           +E R S++VFI +++ + T
Sbjct: 286 LRYKGVLWMDGADRKVVFQGVHQIMGSDIGGKWGENESRSSKMVFIGQNLPKET 339


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 653,545
Number of extensions: 24139
Number of successful extensions: 115
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 2
Length of query: 389
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 306
Effective length of database: 726,862
Effective search space: 222419772
Effective search space used: 222419772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)