BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4634.p
         (600 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095630|ref|YP_001100705.1| putative flavin-containing mono...    67   2e-12

>gi|134095630|ref|YP_001100705.1| putative flavin-containing
           monooxygenase [Herminiimonas arsenicoxydans]
          Length = 458

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 5/137 (3%)

Query: 232 PVFAPKDKIGDWLEMYAKVMELNYW--GSTVCKSASFDEASQRWTVVVEREGKQVVLQPT 289
           P + P+  + D+++   +   L  +   +TV +  +FDE +Q + V VE   KQ     T
Sbjct: 95  PSYPPRAVLFDYIQGRMERNNLRQYIRFNTVTRWVNFDENTQTFEVAVEDLSKQHTYTET 154

Query: 290 --QLVLATGMSGKPNVPRFPGAENFQGEQHHSSRHPGPDGYRGKKVVVVGSNNSAHDICA 347
              LV+ATG    P+VP F G + F G   H+    G D ++GK +++VG + SA DI  
Sbjct: 155 FDYLVVATGHFSTPHVPYFKGLDTFPGAVMHAHDFRGADQFKGKDLLLVGGSYSAEDIGV 214

Query: 348 ALWENGV-DVTMLQRSS 363
             +++G   VT+  RS+
Sbjct: 215 QCYKHGARSVTISYRSA 231


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.135    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,213,017
Number of extensions: 51892
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 513
Effective length of database: 713,682
Effective search space: 366118866
Effective search space used: 366118866
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)