BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4633.p (257 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 220 6e-59 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 161 3e-41 gi|134096235|ref|YP_001101310.1| ABC transporter ATP-binding pro... 138 3e-34 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 136 1e-33 gi|134096365|ref|YP_001101440.1| phosphite import ATP-binding pr... 134 5e-33 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 220 bits (560), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 114/246 (46%), Positives = 162/246 (65%), Gaps = 8/246 (3%) Query: 9 MIQIRHLQKSFGEHVVLKDISIEIARGSVVAMIGPSGSGKSTLLRCLNLLTVPDRGSVRI 68 MI+++++ K +G VL D + +A+G VV + GPSGSGKSTL++ +N L +GS+ + Sbjct: 1 MIEMKNVSKWYGSFQVLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGSITV 60 Query: 69 GTRHFEFNGRKSHLPKERELAAFRARTGMVFQHFNLFPHMTALENVMEGMVTVLRTPKAE 128 +G PK L A R+R GMVFQ+F LFPH++ EN+ G + VL + E Sbjct: 61 -------DGISVGDPKT-NLPALRSRIGMVFQNFELFPHLSIRENLTLGQIRVLGRSEEE 112 Query: 129 ARAQAMALLQKVGLIERADMYPQKLSGGQKQRIAIARALAMQPDVMLFDEATSALDPELV 188 A + + L +VGLI + D +P +LSGGQ+QR+AIARALAM P MLFDE TSALDPE++ Sbjct: 113 AAERGLKYLDRVGLIAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMI 172 Query: 189 GEVLNVIRGLAADGMTMILVTHEIAFAREVADQVVFMRDGVVVEAGPPSQVIDHPREAAT 248 EVL+V+ GLA DGMTM++VTHE+ FAR+VA++V+FM G +VE + R Sbjct: 173 NEVLDVMVGLAQDGMTMMVVTHEMGFARKVANRVIFMDQGTIVEDCTKDEFFGTVRSDRA 232 Query: 249 QAFLSR 254 + FL++ Sbjct: 233 RDFLAK 238 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 161 bits (407), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 98/251 (39%), Positives = 141/251 (56%), Gaps = 16/251 (6%) Query: 10 IQIRHLQKSFGEHVVLKDISIEIARGSVVAMIGPSGSGKSTLLRCLNLLTVPDRGSVRIG 69 I+++++ K FG V L D+S+E G + A++GPSG GK+TLLR + L PD G V + Sbjct: 3 IEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 70 TRHFEFNGRKSHLPKERELAAFRARTGMVFQHFNLFPHMTALENVMEGM---VTVLRTPK 126 + H+ +ER++ G VFQH+ LF HMT EN+ G+ R + Sbjct: 63 GE----DASARHV-RERQV-------GFVFQHYALFKHMTVFENIAFGLRVRPAATRPSE 110 Query: 127 AEARAQAMALLQKVGLIERADMYPQKLSGGQKQRIAIARALAMQPDVMLFDEATSALDPE 186 + + + LL+ V L AD YP +LSGGQ+QRIA+ARALA++P V+L DE ALD + Sbjct: 111 SVIKEKVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAK 170 Query: 187 LVGEVLNVIRGLAAD-GMTMILVTHEIAFAREVADQVVFMRDGVVVEAGPPSQVIDHPRE 245 + E+ +R L + +T I VTH+ A EVADQ+V M G V + G P V ++P Sbjct: 171 VRKELRRWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPAS 230 Query: 246 AATQAFLSRFN 256 FL N Sbjct: 231 PFVYGFLGNVN 241 >gi|134096235|ref|YP_001101310.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 267 Score = 138 bits (347), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 144/249 (57%), Gaps = 13/249 (5%) Query: 8 SMIQIRHLQKSFGEHVVLKDISIEIARGSVVAMIGPSGSGKSTLLRCLNLLTVPDRGSVR 67 ++++IR+L ++GE +L +++++ RG V+A++G SGSGK+T+LR + +P G+V Sbjct: 3 NLVEIRNLHFAYGERPILSELTMDFPRGKVIAVMGGSGSGKTTVLRLIGGQLLPQAGNVV 62 Query: 68 IGTRHFEFNGRKSHLPKERELAAFRARTGMVFQHFNLFPHMTALENVMEGMVTVLRTPKA 127 + +G+ + L R + GM+FQH LF M+ +NV + P+ Sbjct: 63 V-------DGQVVSEMDTKALYRMRRKMGMLFQHGALFTDMSVFDNVAFPLREHTDLPEQ 115 Query: 128 EARAQAMALLQKVGLIERADMYPQKLSGGQKQRIAIARALAMQPDVMLFDEATSALDPEL 187 + LQ VGL A + P ++SGG +R+A+ARA+A+ P ++++DE + LDP Sbjct: 116 LIHDLVLMKLQAVGLRNAAQLKPAEISGGMARRVALARAIALDPQLIMYDEPFAGLDPIS 175 Query: 188 VGEVLNVIRGLA-ADGMTMILVTHEIAFAREVADQVVFMRDGVVVEAGPPSQVIDHPREA 246 +G N+IR L A G T ILV+H++ + +AD V F+ +G VV G P++++ A Sbjct: 176 MGMTANLIRKLNDALGSTTILVSHDVHESFLIADYVYFLSNGKVVAQGTPAEMM-----A 230 Query: 247 ATQAFLSRF 255 +T ++ +F Sbjct: 231 STDPYVKQF 239 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 136 bits (343), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 83/250 (33%), Positives = 139/250 (55%), Gaps = 14/250 (5%) Query: 8 SMIQIRHLQKSFGEHVVLKDISIEIARGSVVAMIGPSGSGKSTLLRCLNLLTVPDRGSVR 67 ++++IR+L + FG++ V+ +IS+ I G ++GPSG GK+TLLR + PD G + Sbjct: 2 ALLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKIL 61 Query: 68 IGTRHFEFNGRKSHLPKERELAAFRARTGMVFQHFNLFPHMTALENVMEGMVTVLRTPKA 127 + + +P E+ + RT VFQ++ LFPHMT N+ + + TPK+ Sbjct: 62 LDGVDL------TGVPPEQRVV----RT--VFQNYALFPHMTVAGNIAFPL-EMANTPKS 108 Query: 128 EARAQAMALLQKVGLIERADMYPQKLSGGQKQRIAIARALAMQPDVMLFDEATSALDPEL 187 E + + L+ V L A YP +LSGGQ+QR++IARAL +P ++L DE SALD +L Sbjct: 109 EIKQKVDEALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQL 168 Query: 188 VGEV-LNVIRGLAADGMTMILVTHEIAFAREVADQVVFMRDGVVVEAGPPSQVIDHPREA 246 ++ + +I G+T + VTH+ A A ++ ++ M G + + P+++ +PR Sbjct: 169 REQMQIELINLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSR 228 Query: 247 ATQAFLSRFN 256 F+ N Sbjct: 229 FVADFIGTCN 238 >gi|134096365|ref|YP_001101440.1| phosphite import ATP-binding protein pxtA [Herminiimonas arsenicoxydans] Length = 262 Score = 134 bits (337), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 133/238 (55%), Gaps = 15/238 (6%) Query: 9 MIQIRHLQKSFGEHVVLKDISIEIARGSVVAMIGPSGSGKSTLLRCLNLLTVPDRGSVRI 68 MIQ+ + +G+ L+ S+++ +G ++G SG+GKSTLLRC+N++ P G++ + Sbjct: 1 MIQLNDVSVRYGDTYALRSTSLKLHKGQFTVLLGASGAGKSTLLRCINMMCQPSAGTIDV 60 Query: 69 GTRHFEFNGRKSHLPKERELAAFRARTGMVFQHFNLFPHMTALENVMEGMV---TVLRTP 125 L R L A R +TGMVFQ L TAL+NV+ G + T LR+ Sbjct: 61 VGLGL--------LQNRRVLQAHRRQTGMVFQQHQLIARRTALQNVLMGRLGYHTTLRSL 112 Query: 126 ---KAEARAQAMALLQKVGLIERADMYPQKLSGGQKQRIAIARALAMQPDVMLFDEATSA 182 E + + L +VGL+ +A +LSGGQ+QR+ IARAL QP ++L DE ++ Sbjct: 113 FPLSQEEQRIGLRALDRVGLLHKALTRVDQLSGGQQQRVGIARALTQQPKLILADEPVAS 172 Query: 183 LDPELVGEVLNVIRGLAA-DGMTMILVTHEIAFAREVADQVVFMRDGVVVEAGPPSQV 239 LDP +VL ++R + DG++ ++ H++ A + +D++V + G V+ P+ + Sbjct: 173 LDPATSEKVLEILRQICKEDGISAVVSLHQVDLALKYSDRIVGLAHGKVMFDAVPTDL 230 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.135 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 452,602 Number of extensions: 17525 Number of successful extensions: 253 Number of sequences better than 1.0e-08: 45 Number of HSP's gapped: 175 Number of HSP's successfully gapped: 48 Length of query: 257 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 177 Effective length of database: 736,747 Effective search space: 130404219 Effective search space used: 130404219 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)