BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4632.p
         (221 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC transpo...   133   7e-33
gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC transpo...    91   6e-20

>gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC
           transporter membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 228

 Score =  133 bits (334), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 75/207 (36%), Positives = 121/207 (58%), Gaps = 8/207 (3%)

Query: 19  GFFYTLSYTVACIALGLLVGLLVGLGRLSSHGFISAPLRAFVEVFRCTPVLVQLVWFYYA 78
           G  YTL  T+     G+L G L+ L RLSS   ++    A+V + R  P+L+ + WFY+ 
Sbjct: 19  GLKYTLQLTLTAAIGGVLFGTLLALARLSSFKSLAFLAAAYVNLMRSIPLLLVIFWFYFL 78

Query: 79  LPVLLD--------IQMSAGMAAMLSLALYGGAFYSEIIRGGIVSIDIGQSEAGWALGMT 130
           +PV+L         +Q+ A  +A ++  ++  A++ EI+R GI SI  GQ  A +ALG++
Sbjct: 79  VPVVLQTITGSERPVQLGADRSAYITFIMFEAAYFCEIMRAGIQSISKGQVNAAYALGLS 138

Query: 131 RWQLMKRVILPQAFKRMTPPLVNQSIMQLKNTSLLSVLAVPDLLYQGQIIAHETYRPLEV 190
             Q M+ V+LPQAF+ M P L+ Q+I+  ++ SL+S+L V D +     IA    R +E+
Sbjct: 139 YAQAMRLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLNVTDFVGASVKIAQRDSRVVEM 198

Query: 191 YTLVAVIYFVILLPATIWAKRLENRLA 217
           Y  VA++YFV+    +   K+L+ R+A
Sbjct: 199 YLFVAIVYFVLSFALSSMVKQLQKRIA 225


>gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC
           transporter permease [Herminiimonas arsenicoxydans]
          Length = 243

 Score = 90.5 bits (223), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 114/223 (51%), Gaps = 12/223 (5%)

Query: 5   DFGSLWQFRNIIGIGFFYTLSYTVACIALGLLVGLLVGLGRLSSHGFISAPLRAFVEVFR 64
           D    W +  + G+G  +TL+          ++G L+G+ R +   ++     A+VE+FR
Sbjct: 12  DGDGTWGYMLLSGLG--WTLAVAFFAWIFAFVLGSLIGIARTTEKRWLVGLGGAYVELFR 69

Query: 65  CTPVLVQLVWFYYALP----------VLLDIQMSAGMAAMLSLALYGGAFYSEIIRGGIV 114
             P+LVQ   +Y+ +P          + LD  +   + A++ L  +  +  +E +R GI 
Sbjct: 70  NIPLLVQFFVWYFVIPGLVPAVKTWVITLDPTIHQFVTAIICLGFFTSSRIAEQVRSGIQ 129

Query: 115 SIDIGQSEAGWALGMTRWQLMKRVILPQAFKRMTPPLVNQSIMQLKNTSLLSVLAVPDLL 174
           S+  GQ  AG+ALG+T  Q  + V+LP A++ + PPL ++ +  +KNT++   + + +L 
Sbjct: 130 SLPRGQRNAGYALGLTGMQTYRFVLLPMAYRIIIPPLTSELMNLIKNTAVAYSIGLVELF 189

Query: 175 YQGQIIAHETYRPLEVYTLVAVIYFVILLPATIWAKRLENRLA 217
           ++ + +   T+R  E +    ++Y VI + A      +E R A
Sbjct: 190 FRTREMGEMTFRYFEAFGAATLMYVVIAMLANRVMALVERRTA 232


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.330    0.143    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 362,884
Number of extensions: 11198
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 2
Length of query: 221
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 143
Effective length of database: 743,337
Effective search space: 106297191
Effective search space used: 106297191
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 127 (53.5 bits)