BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4628.p
         (221 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095094|ref|YP_001100169.1| basal-body outer-membrane L (li...    93   1e-20

>gi|134095094|ref|YP_001100169.1| basal-body outer-membrane L
           (lipopolysaccharide layer) ring protein [Herminiimonas
           arsenicoxydans]
          Length = 223

 Score = 92.8 bits (229), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/188 (36%), Positives = 106/188 (56%), Gaps = 11/188 (5%)

Query: 16  LLSACS-SPAPMVTGPTSVRP-AYQVANVENNGAIFRVSSAQ-LFEEPTTYNVGDIIKID 72
           LLSAC+  P  +V  P + RP A        NGAIF+ ++ + +FE+     +GD I I 
Sbjct: 15  LLSACALRPDTIVNTPLTARPQAASTIAPPANGAIFQAAAYRPMFEDRRARLIGDTITIV 74

Query: 73  ISESISSSNKAATNNSRDSSLTQKGPGSDAPLGGLFTQLYNANYTATGNNTFK--GSGDS 130
           I+E  S+  +A +  S+  S+T   P     LG L  +L     +A+G+N  K    G  
Sbjct: 75  INEKSSAGKQAGSAASKTGSVTASAPNVFGLLGSLTNRL-----SASGSNAIKYEDKGAV 129

Query: 131 SNSNTMTGTLMVSIVEVLPNRNLVVAGEKRIGVNGNINTLRFSGVVRTRDIRGG-IVASS 189
           ++SN    T+ V++++VL N NL+VAGEK++ ++     +RFSGVV    +  G IV+S+
Sbjct: 130 TSSNNFISTMTVTVIDVLSNGNLIVAGEKQVSLDKGSEFIRFSGVVDPSTVNSGNIVSST 189

Query: 190 NVADARLE 197
            VADA++E
Sbjct: 190 QVADAKIE 197


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.313    0.128    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 297,751
Number of extensions: 9446
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 143
Effective length of database: 743,337
Effective search space: 106297191
Effective search space used: 106297191
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 127 (53.5 bits)