BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4627.p
         (247 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094704|ref|YP_001099779.1| GTP cyclohydrolase I [Herminiim...    95   3e-21

>gi|134094704|ref|YP_001099779.1| GTP cyclohydrolase I
           [Herminiimonas arsenicoxydans]
          Length = 215

 Score = 94.7 bits (234), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 79/159 (49%), Gaps = 3/159 (1%)

Query: 83  QDTAKRVAKMYLNEVFKGRYQAAPPVTEFPN-IERLNELMIVGPITVRSACSHHLCPIMG 141
           Q+T KRV K +           A  +  F +  E+  EL+IV  I V S C HHL P  G
Sbjct: 54  QETPKRVQKAWQQWTAGYAQDPAEILKVFSDGAEQYKELIIVRGIPVYSHCEHHLAPFFG 113

Query: 142 KVWVGVMPNEHSNLIGLSKYARLLEWVMSRPQIQEEAVSQAADLLMQKLQPDGLAIVMEA 201
              +G  PN    ++GLSK  RL++    R Q+QE    Q A+ LM+ +QP  + +V+  
Sbjct: 114 TATIGYTPN--GKIVGLSKLTRLVDCYARRLQVQERLTIQIAETLMEHVQPLSVGVVIRC 171

Query: 202 DHFCMHWRGVKDMDSKMINSVMRGSFLRDANLRREFLAL 240
            H CM  RG++    + + S + G    +  LR EFL L
Sbjct: 172 RHMCMESRGIQTQGEETVTSALLGEMRSNPALRSEFLTL 210


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 383,288
Number of extensions: 13504
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 168
Effective length of database: 740,042
Effective search space: 124327056
Effective search space used: 124327056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)