BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4625.p
         (406 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093716|ref|YP_001098791.1| hypothetical protein HEAR0446 [...   400   e-113
gi|134093706|ref|YP_001098781.1| hypothetical protein HEAR0435 [...   118   6e-28
gi|134095716|ref|YP_001100791.1| hypothetical protein HEAR2548 [...   101   7e-23

>gi|134093716|ref|YP_001098791.1| hypothetical protein HEAR0446
           [Herminiimonas arsenicoxydans]
          Length = 399

 Score =  400 bits (1029), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/403 (50%), Positives = 268/403 (66%), Gaps = 15/403 (3%)

Query: 1   MLKSIALEQLRLGMYVHSIPGGWIKHPFWRKSFKIETLEDLQTLRECPVEEVTIDTAKGR 60
           MLK I +EQLR+GM++      W + PFWR S  ++ L+DL  ++   V +V IDT+KG 
Sbjct: 1   MLKQINVEQLRVGMFIQKFCSTWDESPFWRTSLLLDNLKDLHAIQASDVAQVWIDTSKGL 60

Query: 61  DIAPENLTEDDEEPAVELSLDHHG-APTTVAVPKPATRTETTIERERAARIISASKSTVL 119
           D+         ++P VE  +     AP  + VP+ A+  +   E  RA +I +  K  V 
Sbjct: 61  DV---------KKPVVENEVATQIIAPPPLIVPRRASFDD---EMARAKKICADGKVAVT 108

Query: 120 NMFSEARMGKTVDVKDAAELVTEITSSVARNADALISLARLKTTDDYTYMHSVAVCAMMI 179
            MF EARMGK ++   A  LV EI+SSV RN DALISLARLK  DDYTYMHSVAVCA+MI
Sbjct: 109 TMFQEARMGKALNTVRAHSLVEEISSSVMRNPDALISLARLKNKDDYTYMHSVAVCALMI 168

Query: 180 SLANQLGMTPEQTKQAGMAGLLHDVGKMAVPLEILNKPAKLTEEEFASVRAHTVHGHGIL 239
           +LA ++ +   Q + AG+AGLLHDVGKM V   IL+KP +LT+EEF  V+ H V GH IL
Sbjct: 169 ALARKMKLDDGQIRDAGLAGLLHDVGKMMVSQSILDKPGQLTDEEFVVVKEHPVEGHKIL 228

Query: 240 QQIEGIGEAALDVSLHHHEKIDGSGYPFNLKADAISVMAKMGAVCDVYDAITSNRPYKAG 299
                + EAALDV LHHHE+ DG+GYP  L  + IS+ A+MGAVCDVYDAITSNR YKAG
Sbjct: 229 SVSPDVSEAALDVCLHHHERFDGTGYPHRLAGENISLFARMGAVCDVYDAITSNRAYKAG 288

Query: 300 WDPARSIRHMAASAGHFDPVTMEAFVKAIGIYPTGSCVILQSGRLGVVVDQRPDHLLTPR 359
           W+P+ S+R MA   GHFDP   +AFVK IGIYPTG+ V L++GR+GVVV+Q  + LLTP+
Sbjct: 289 WEPSESLRRMAEWKGHFDPAVFQAFVKCIGIYPTGALVRLKTGRIGVVVEQSENSLLTPK 348

Query: 360 VKLFYSTTNRMPLKPEIIDLT--HASDRIVAYADPAKWGIRSL 400
           VK+F+S  +   + PE++DL      D+I+   D  K G++++
Sbjct: 349 VKIFFSVKSNAYIPPELVDLAKLEGYDKIIGLEDAQKLGLKNV 391


>gi|134093706|ref|YP_001098781.1| hypothetical protein HEAR0435
           [Herminiimonas arsenicoxydans]
          Length = 457

 Score =  118 bits (295), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 94/168 (55%), Gaps = 2/168 (1%)

Query: 166 YTYMHSVAVCAMMISLANQLGMTPEQTKQAGMAGLLHDVGKMAVPLEILNKPAKLTEEEF 225
           YT  HS  V      +A  +G++PE+ +      LLHDVGK+ V   +L+KP KL  +E+
Sbjct: 290 YTSGHSARVALYTDMIAEAMGLSPERRRWLKRGALLHDVGKLGVSNSVLDKPDKLDRDEW 349

Query: 226 ASVRAHTVHGHGILQQIEGIGEAALDVSLHHHEKIDGSGYPFNLKADAISVMAKMGAVCD 285
            +V+ H  +   IL +I    E A  ++  HHE++DG GYP  LKADAIS+  ++    D
Sbjct: 350 DAVKLHATYTENILSRIGAFAELA-RIAGAHHERLDGGGYPRGLKADAISIETRIITTAD 408

Query: 286 VYDAITSNRPYKAGWDPARSIRHMAASAG-HFDPVTMEAFVKAIGIYP 332
           ++DAIT+ RPY+      R++  MA + G   DP+  EA   A+   P
Sbjct: 409 IFDAITAERPYRGAIPIPRTLEMMATTQGTALDPLCFEALKLALSRLP 456


>gi|134095716|ref|YP_001100791.1| hypothetical protein HEAR2548
           [Herminiimonas arsenicoxydans]
          Length = 198

 Score =  101 bits (251), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 2/173 (1%)

Query: 158 ARLKTTDDYTYMHSVAVCAMMISLANQLGMTPEQTKQAGMAGLLHDVGKMAVPLEILNKP 217
           A L   D+YT  HS  V  +   L    G+         +A   HD+GK+ VP  +L KP
Sbjct: 25  AALDERDEYTRFHSDRVVTLATKLGAACGIPLVDMPVLRLAAQFHDIGKIGVPDNVLKKP 84

Query: 218 AKLTEEEFASVRAHTVHGHGILQQIE-GIGEAALDVSLHHHEKIDGSGYPFNLKADAISV 276
             LT+EE+  +R+HT  G  I +     I +    +  HHHE I+G+GYP  L+ + I +
Sbjct: 85  GPLTQEEWVLMRSHTERGERIFRATGLPIADRIAPIIRHHHEVINGTGYPDGLQGEEIPL 144

Query: 277 MAKMGAVCDVYDAITSNRPYKAGWDPARSIRHMAASAG-HFDPVTMEAFVKAI 328
           M+++ AV D YDA+T+ RPY+      +S+  +    G  FD   +  F K +
Sbjct: 145 MSRILAVADAYDAMTTTRPYREALTHRQSLDFIELDKGVKFDTAIVGVFFKMV 197


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 743,386
Number of extensions: 29094
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 3
Length of query: 406
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 322
Effective length of database: 723,567
Effective search space: 232988574
Effective search space used: 232988574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)