BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4622.p (495 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093798|ref|YP_001098873.1| sensory histidine kinase in two... 95 8e-21 gi|134094677|ref|YP_001099752.1| putative two-component sensor k... 94 2e-20 gi|134095799|ref|YP_001100874.1| putative two-component sensor k... 82 8e-17 gi|134095107|ref|YP_001100182.1| putative oxidative stress resis... 80 3e-16 gi|134093575|ref|YP_001098650.1| putative two-component hybrid s... 79 5e-16 >gi|134093798|ref|YP_001098873.1| sensory histidine kinase in two-component regulatory system with CusR, regulation of copper resistance, senses copper ions [Herminiimonas arsenicoxydans] Length = 482 Score = 94.7 bits (234), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 77/305 (25%), Positives = 142/305 (46%), Gaps = 10/305 (3%) Query: 192 LDQQRQLLTAQVLGAIVLAVLLAFCFGLWLSRPMARLEQAIGRLGDNRFD---QPIEVRG 248 LD +++L L ++A+++A+ W RP+ ++ + I + ++ D P +V Sbjct: 171 LDMFKRILWWATLIVALIALVVAWFAVQWGHRPIRKVSREIRAIRSSQLDVRLSPTDV-- 228 Query: 249 PADIRRLGQQLDWLRQRLADLEAEKSRFLRHVSHELKTPLAALCEGAALLDDGVAGQLND 308 P ++ L + + R+ D A+ + F ++HEL+TP+ L + V D Sbjct: 229 PIELAELAVSFNDMLGRIEDGFAKLANFSADIAHELRTPVTNLSTQTQVALSQVRSA--D 286 Query: 309 NQREIARILRQNTQSLQTQIEDLLRYNEVSFDAQRIHPVPVDLRALLHKVIDDQRLQWLA 368 RE+ + L I D+L + D + + D+ L+ + D + Sbjct: 287 EYREVLYSNLEEFDRLSLMIGDMLFLAQTENDPRNLRLTNTDITGLVQGLFDYFEVLAED 346 Query: 369 RTLTVEIEGAARTVVVDPEKMAIVLSNLLSNAVRFSPEGGCIRFLLAEGPGVVRVECIDQ 428 +T+ + G + ++ D + M LSNLLSNA+R+S G + L + + + Sbjct: 347 ANITLTLSGQVKPIIADRDMMLRALSNLLSNAIRYSLPGSSVIVRLHQDAKRTTICVENP 406 Query: 429 GPGVAPTDAARIFEPFYQGLHQPTGARR-GNGIGLSVVREYVLAHSGKVYLVPREGGAHF 487 G +A D ++F+ F++ P+ R+ G G+GL++V+ + AH GKV R G F Sbjct: 407 GEQIAEDDLPKLFDRFFRV--DPSRQRKSGAGLGLAIVKSIIEAHDGKVQATSRNGLIKF 464 Query: 488 RIELP 492 IELP Sbjct: 465 LIELP 469 >gi|134094677|ref|YP_001099752.1| putative two-component sensor kinase (partial) [Herminiimonas arsenicoxydans] Length = 577 Score = 93.6 bits (231), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 115/224 (51%), Gaps = 7/224 (3%) Query: 273 KSRFLRHVSHELKTPLAALCEGAALLDDGVAGQLNDNQREIARILRQNTQSLQTQIEDLL 332 K+R++ +SHEL++PL ++ + +L L R + + ++ + L +++LL Sbjct: 126 KTRYVAGISHELRSPLNSILGYSQILLKN--EHLAAAPRTAIQTIHRSGEHLLGLVDELL 183 Query: 333 RYNEVSFDAQRIHPVPVDLRALLHKVIDDQRLQWLARTLTVEIE---GAARTVVVDPEKM 389 + D R+ P P+ L A L ++ R Q A+ L + +R V+ D +++ Sbjct: 184 DLARIEADRMRLEPAPILLSAFLEDLLSMVRPQAEAKGLKLLCTYNGKISRYVLADGKRL 243 Query: 390 AIVLSNLLSNAVRFSPEGGCIRFLLAEGPGVVRVECIDQGPGVAPTDAARIFEPFYQGLH 449 + NLL+NAVRF+ +G + + P VR + +D G G+A D RIF+PF +G Sbjct: 244 RQIFINLLTNAVRFTDDGS-VTLHVECSPASVRFDVVDTGIGIAVQDRQRIFQPFERGAA 302 Query: 450 QPTGARRGNGIGLSVVREYVLAHSGKVYLVPREG-GAHFRIELP 492 G G+GL++ + +L +G + LV +G G+ F + LP Sbjct: 303 GRLRGEPGAGLGLAITEKLILLMNGSLNLVSMQGQGSTFIVRLP 346 >gi|134095799|ref|YP_001100874.1| putative two-component sensor kinase transcriptional regulatory protein [Herminiimonas arsenicoxydans] Length = 512 Score = 81.6 bits (200), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 84/313 (26%), Positives = 145/313 (46%), Gaps = 30/313 (9%) Query: 191 ALDQQRQLLTAQVLGAIV--LAVLLAFCFGLWLS-----RPMARLEQAI-GRLGDNRFDQ 242 LD++ QL+ + G IV +L +W + RP+A L+Q I R D+ Sbjct: 186 TLDKRSQLVNQIIKGVIVPEFIILPIALILVWFALTRGLRPLAELQQRIRARRPDDL--S 243 Query: 243 PIEV-RGPADIRRLGQQLDWLRQRLADLEAEKSRFLRHVSHELKTPLAALCEGAALLDDG 301 PI+ P +I L L+ + +RL+ + RF+ +H++KTPLA + + L Sbjct: 244 PIDSGHVPEEIIPLVGSLNDMLERLSQSIKVQKRFIADAAHQMKTPLAGMRMQSEL---- 299 Query: 302 VAGQLNDNQREIARILRQ---NTQSLQTQIEDLLRYNEVSFDAQRIHPVPV-DLRALLHK 357 + EI + L Q +++S + LL + P+ V +L L Sbjct: 300 --ALRQTDHAEIHKSLEQLAKSSKSATRMVNQLLALARAENQTPQTKPMQVLELSELARD 357 Query: 358 VIDDQRLQWLARTLTVEIEGAARTVVV--DPEKMAIVLSNLLSNAVRFSPEGG--CIRFL 413 + + R + + E V+ D + +L+NL+ NA+ ++P GG +R Sbjct: 358 TVQNWVQTSFNRKIDLGFEQPDEAVMARGDATMLHELLNNLIDNALSYTPAGGNATVRVR 417 Query: 414 LAEGPGVVRVECIDQGPGVAPTDAARIFEPFYQGLHQPTGARRGNGIGLSVVREYVLAHS 473 + G+ +E D GPG+AP + + IFE FY+ L G+G+GL++VRE L H+ Sbjct: 418 TDQQAGLAFLEVEDNGPGIAPHERSHIFERFYRILGSNV---EGSGLGLAIVREIALQHN 474 Query: 474 GKVYLV--PREGG 484 ++ ++ PR G Sbjct: 475 AEIEILNNPRCQG 487 >gi|134095107|ref|YP_001100182.1| putative oxidative stress resistance two-coponent transmembrane sensor histidine kinase transcription regulator [Herminiimonas arsenicoxydans] Length = 455 Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 76/279 (27%), Positives = 127/279 (45%), Gaps = 39/279 (13%) Query: 221 LSRPMARLEQAIGRLGDNRFDQPIEVRGPADIRRLGQQLDWLRQRLADLEAEKSRFLRHV 280 +++P+ARL A + + ++ P+ GP +IR + + L +E++++ L + Sbjct: 183 INQPLARLTAATRAIANGQWPAPLPESGPTEIREANHSFNQMVDDLNRVESDRAVVLAGI 242 Query: 281 SHELKTPLAAL---CEGAALLDDGVAGQLNDNQREIARILRQNTQSLQTQIEDLLRYNEV 337 SH+L+TPLA + E A L DD G ++ + + + I L Y + Sbjct: 243 SHDLRTPLARMQLEVEMAGLPDDARKG------------MQSDLEQMDAIIGQFLDYAK- 289 Query: 338 SFDAQRIHPVPVDLRALLHKVIDDQRLQWLARTLTVEIEGAAR---TVVVDPEKMAIVLS 394 D+ H VDL ALL + + AR V++ TV+ + + V++ Sbjct: 290 PVDSS--HFKSVDLTALLSEAAHEA-----ARLPDVQVHPFMEDKVTVLGNAIDIKRVVN 342 Query: 395 NLLSNAVRFSPEGG--------CIRFLLAEGPGVVRVECIDQGPGVAPTDAARIFEPFYQ 446 NL+ NA R+ C R EG V+ +E D G GV + AR+ PF + Sbjct: 343 NLVENARRYGKATDAHHVDIDICCRI---EGDKVM-LEIADHGAGVPAEEIARLLRPFTR 398 Query: 447 GLHQPTGARRGNGIGLSVVREYVLAHSGKVYLVPREGGA 485 + G G G+GL++V V H GK++L R+GG Sbjct: 399 -MDSARGQANGAGLGLAIVDRIVKRHGGKLHLFNRDGGG 436 >gi|134093575|ref|YP_001098650.1| putative two-component hybrid sensor and regulator [Herminiimonas arsenicoxydans] Length = 468 Score = 79.0 bits (193), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 110/241 (45%), Gaps = 40/241 (16%) Query: 273 KSRFLRHVSHELKTPLAALCEGAALLDDGVAGQLNDNQREIAR---ILRQNTQSLQTQIE 329 + FL ++HEL++PLA + A LL G++ + + I+ + + ++ Sbjct: 106 QEEFLSMLAHELRSPLAPIAMAADLL-----GKITTAHPMLPKLYGIISRQVGHMAHLVD 160 Query: 330 DLLRYNEVSFDAQRIHPVPVDLRA---LLHKVID----------DQRLQWLARTL---TV 373 DLL DA R+ + L+ LL ++ID +QR Q L TL TV Sbjct: 161 DLL-------DASRVSTGNITLQKRSLLLSEIIDSAVETSQPFINQRNQQLTITLPEDTV 213 Query: 374 EIEGAARTVVVDPEKMAIVLSNLLSNAVRFSPEGGCIRFLLAEGPGVVRVECIDQGPGVA 433 I G D ++A +NL+ NA +F+P G I VV+V D G G+A Sbjct: 214 VING-------DLVRLAQAFANLIINATKFTPVDGHIDISAQVLADVVKVSIKDNGMGIA 266 Query: 434 PTDAARIFEPFYQGLHQPTGARRGNGIGLSVVREYVLAHSG--KVYLVPREGGAHFRIEL 491 P IF+ F QG H ++ G GIGLS+VR V H G VY G+ F + L Sbjct: 267 PDIQPFIFDLFRQGPHSLDRSQGGLGIGLSLVRTVVQMHGGTVSVYSAGLGCGSEFFVVL 326 Query: 492 P 492 P Sbjct: 327 P 327 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 847,486 Number of extensions: 33248 Number of successful extensions: 192 Number of sequences better than 1.0e-08: 22 Number of HSP's gapped: 158 Number of HSP's successfully gapped: 22 Length of query: 495 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 409 Effective length of database: 716,977 Effective search space: 293243593 Effective search space used: 293243593 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)