BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4610.p (232 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095636|ref|YP_001100711.1| high-affinity branched-chain am... 149 9e-38 gi|134096407|ref|YP_001101482.1| high-affinity branched-chain am... 143 6e-36 gi|134093662|ref|YP_001098737.1| branched-chain amino acid ABC t... 133 7e-33 gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 132 2e-32 gi|134095847|ref|YP_001100922.1| high-affinity branched-chain am... 131 2e-32 >gi|134095636|ref|YP_001100711.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 241 Score = 149 bits (377), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 86/224 (38%), Positives = 135/224 (60%), Gaps = 4/224 (1%) Query: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAR--GNV 58 +L++ L YG ++G+ LDV++G++++L+G NG GKTT LK + G LP R G++ Sbjct: 5 VLKIAGLKVAYGGIQAVKGIDLDVRQGELITLIGANGAGKTTTLKAITGTLPECRVDGHI 64 Query: 59 MFEGQDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRASTIKGE-VY 117 + GQ I L + + +A VP+GR +F R++++EN+LMG T + ++ E + Sbjct: 65 EYAGQAIKGLGSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRNDKQGIADDMEKWF 124 Query: 118 ELFPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVIS 177 +FP LKE + G LSGG+QQ LA+ARAL++ P+L++LDEP+ G+ P +++ I VI Sbjct: 125 AVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPQLLLLDEPSMGLSPIMVEKIFEVIR 184 Query: 178 LLRQRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQM 221 + +G I ILL EQ A + A VM G + G QM Sbjct: 185 SVAAQG-ITILLVEQNARLALQAAHRAYVMESGLITMQGDAQQM 227 >gi|134096407|ref|YP_001101482.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 143 bits (361), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 135/227 (59%), Gaps = 6/227 (2%) Query: 2 LQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVARGNVMFE 61 L V L Y + L VS++V GK+ +LG NG GK+TL++ ++G+ P +G +++ Sbjct: 4 LSVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILWN 63 Query: 62 GQDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRASTIK---GEVYE 118 G+++ K H GI+ +P+GR++F R++V EN+ +G ++ ++ ++ VYE Sbjct: 64 GRNLAGEKTHAIIASGISCIPEGRKVFPRMSVAENLALGAFLVT--NSAVVRERLARVYE 121 Query: 119 LFPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISL 178 +FP LKE + G +SGG+Q ++I R L+AEP+L+++DEP+ G+ P +K+ VI Sbjct: 122 IFPRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPQLLVIDEPSLGLSPLYVKENFNVIRR 181 Query: 179 LRQRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGED 225 + G I +LL EQ ++ V+S+G V+A GT +++ D Sbjct: 182 INALG-ITVLLVEQNARQTLAISHYGYVLSQGRVMAEGTAEELASND 227 >gi|134093662|ref|YP_001098737.1| branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 133 bits (335), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 132/224 (58%), Gaps = 2/224 (0%) Query: 2 LQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVARGNVMFE 61 L + +N LR +S+ ++ G+++ L+GRNG GK+T + +MG P+ G + ++ Sbjct: 3 LALENVNVILAGNPVLRDISMHIEPGELVCLVGRNGAGKSTTFRSIMGFQPLKSGAIKWK 62 Query: 62 GQDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATL-SGRRASTIKGEVYELF 120 I ++ H+ +LG+ Y P+G ++F LTVE+N+ + T SGR A E Y +F Sbjct: 63 RSAINGMQTHKIVELGLGYTPEGSDVFGDLTVEDNIALPTWTRKSGRSAQERIDEAYAVF 122 Query: 121 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR 180 P LK+ LHR G LSGG+++ ++IARAL +P+L++LDE EG+ P+II I + + Sbjct: 123 PKLKQYLHRGGQQLSGGERKMVSIARALALDPELLLLDEAFEGLSPAIIPTISEGLQSIL 182 Query: 181 QRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGE 224 ++G G+LL E F AD V+ RGE+V GT Q + + Sbjct: 183 KQGR-GVLLAESNFYHLPPFADRLYVIERGEIVFEGTLAQAEAD 225 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 132 bits (331), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 138/226 (61%), Gaps = 7/226 (3%) Query: 2 LQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVARGNVMFE 61 L V+ L + YGA +R V+L V+ G+V+ LLG NG GKTT ++G++P G + + Sbjct: 5 LIVSGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRIELD 64 Query: 62 GQDITKLKPHQRAKLGIAYVPQGREIFARLTVEENM--LMGMATLSGRRAST--IKGEVY 117 G DI++ H+RA+LG++Y+PQ +F +L+VE+N+ ++ + ++G+ S I+ + Sbjct: 65 GVDISRQPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKALSKEQIEQRLD 124 Query: 118 ELFPVLK--EMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRV 175 L L+ ++ + LSGG+++++ IARAL P+ ++LDEP G+ P + +I R+ Sbjct: 125 TLLADLQIEKLRENQALSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIEIQRI 184 Query: 176 ISLLRQRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQM 221 + L++RG IG+L+ + + D ++++G V+A+G D + Sbjct: 185 VRFLKERG-IGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDI 229 >gi|134095847|ref|YP_001100922.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 243 Score = 131 bits (330), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 131/225 (58%), Gaps = 5/225 (2%) Query: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVARGNVMF 60 +L+V L YG RG+S++V +G+ + ++G NG GK++ LK + GV+ A G++ Sbjct: 5 LLKVENLCVNYGHIEAARGISIEVGEGEFVGMIGSNGAGKSSALKAIAGVVKPASGSITL 64 Query: 61 EGQDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRA-STIKGEV--- 116 G+ + L H+ G+A VP+GR +FA +VE+N+++G + R + ++ ++ Sbjct: 65 GGKPVQGLASHEMVHQGVALVPEGRFVFADQSVEDNLILGGFVQAQRSGVAALRDDIDRM 124 Query: 117 YELFPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVI 176 ++LFP LKE ++ G LSGG+QQ L IAR L++ P+L+++DE + G+ P I+ + V+ Sbjct: 125 FQLFPRLKERRTQQAGSLSGGEQQMLVIARGLMSHPRLLLIDEVSLGLAPKILDFLFPVL 184 Query: 177 SLLRQRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQM 221 L ++G + ILL EQ A + VM G V +G + Sbjct: 185 VDLNRQG-LSILLVEQIATRALAVTSRAYVMENGNVKISGRSSDL 228 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.139 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 391,730 Number of extensions: 14790 Number of successful extensions: 168 Number of sequences better than 1.0e-08: 42 Number of HSP's gapped: 127 Number of HSP's successfully gapped: 44 Length of query: 232 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 153 Effective length of database: 740,042 Effective search space: 113226426 Effective search space used: 113226426 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)