BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4609.p (289 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095637|ref|YP_001100712.1| high-affinity branched-chain am... 129 2e-31 gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 123 1e-29 gi|134093663|ref|YP_001098738.1| putative branched-chain amino a... 112 2e-26 gi|134096407|ref|YP_001101482.1| high-affinity branched-chain am... 99 3e-22 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 97 1e-21 >gi|134095637|ref|YP_001100712.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 260 Score = 129 bits (324), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/253 (34%), Positives = 135/253 (53%), Gaps = 15/253 (5%) Query: 46 ILYLENITVSFDGFKAINNLNLDISVGELRCIIGPNGAGKTTMMDVITGKTRPTSGTAFF 105 IL + N++ F G +A+ ++N+ I G++ +IGPNGAGKTT +VITG + SG+ F Sbjct: 10 ILNIANVSKRFGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGS-FE 68 Query: 106 GQTIDLTKMTEYEIAHAGIGRKFQRPTVFEQHTVFENLELAMKMDKRVKTTLFARLSSEQ 165 + + +A AGI R FQ +F + T EN+ + + R LF + + Sbjct: 69 LAGKAYSPSAPHLVAKAGIARTFQNIRLFGEMTALENVMVGRHV--RTHQGLFGAVFHHK 126 Query: 166 IGKIE---------EILKLIRLSGQEQRMAGLLSHGQKQWLEIGMLLMQEPQLLLLDEPV 216 + E E+L + ++ R A LS+G ++ LEI L +PQLL LDEP Sbjct: 127 AARQEEAAIRARAMELLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALDEPA 186 Query: 217 AGMSDAETARTAELLNELRGK-HSIMVVEHDMGFVEEIAQGGKVTVLHEGSVLAEGNMRQ 275 AGM+ E ELL +++ + +I+++EHD+ V + ++TVL G +AEG Sbjct: 187 AGMNATEKLGLRELLVKIKAEGKTILLIEHDVKLVMGLCD--RITVLDYGKPIAEGVPAD 244 Query: 276 VQSNERVIEVYLG 288 VQ N VIE YLG Sbjct: 245 VQKNPAVIEAYLG 257 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 123 bits (308), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 86/261 (32%), Positives = 136/261 (52%), Gaps = 18/261 (6%) Query: 40 DTTHGA-ILYLENITVSFDGFKAINNLNLDISVGELRCIIGPNGAGKTTMMDVITGKTRP 98 DT G L +++T++F G A + ++ + G + +IGPNGAGK+T ++ ++G RP Sbjct: 340 DTAAGTTCLQTKDMTMAFGGLIANDKVSEVLKAGTVHSVIGPNGAGKSTFINCVSGFYRP 399 Query: 99 TSGTA-FFGQTIDLTKMTEYEIAHAGIGRKFQRPTVFEQHTVFENLELAMKMDKRVKTTL 157 TSG+ F GQ T +++A G+ R FQ +F T EN+ + D R ++ L Sbjct: 400 TSGSIEFMGQIA--TAKQSHQLARMGLARTFQNTELFGDMTCLENVLVG--ADSRYRSGL 455 Query: 158 FA---RLSS------EQIGKIEEILKLIRLSGQEQRMAGLLSHGQKQWLEIGMLLMQEPQ 208 FA RL S + +L+ + L + A L G ++ LEI L P+ Sbjct: 456 FATLLRLPSYFHDERRYAAEARCLLEYVGLDDYAEEKARNLPFGHQRRLEIARALAMSPK 515 Query: 209 LLLLDEPVAGMSDAETARTAELLNELRGKH-SIMVVEHDMGFVEEIAQGGKVTVLHEGSV 267 LLLLDEP AG++ E +L+ L ++++VEH + + ++ VTVL G V Sbjct: 516 LLLLDEPAAGLTHGEIEDLMKLIRNLASHQITVLLVEHHVDMIMAVSD--HVTVLDYGKV 573 Query: 268 LAEGNMRQVQSNERVIEVYLG 288 +A G + +V+SN VIE Y G Sbjct: 574 IASGTVAEVRSNPAVIEAYFG 594 >gi|134093663|ref|YP_001098738.1| putative branched-chain amino acid ABC transporter, ATP-binding protein [Herminiimonas arsenicoxydans] Length = 255 Score = 112 bits (280), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/258 (28%), Positives = 137/258 (53%), Gaps = 16/258 (6%) Query: 41 TTHGAILYLENITVSFDGFKAINNLNLDISVGELRCIIGPNGAGKTTMMDVITGKTRPTS 100 +T+ +L + I+ + F A++N++L +S GE ++GPNGAGKTT+++V+TG +PT+ Sbjct: 2 STNDVLLQAQQISRHYGDFIALHNVDLSVSRGEFVSVVGPNGAGKTTLVNVLTGLHQPTT 61 Query: 101 GTAFFGQTIDLTKMTEYEIAHAGIGRKFQRPTVFEQHTVFENLELAMKMDKRVKTTLFAR 160 G F + ++ + ++A G+ R FQ ++F + TV E + ++ ++ F Sbjct: 62 GNVHFNGS-NIAGVGAVDLATRGLARAFQLTSIFPELTVRETIAVSACSYLNMRWNGFGS 120 Query: 161 LSSEQIGKIEEIL----KLIRLSGQEQRMAGLLSHGQKQWLEIGMLLMQEPQLLLLDEPV 216 L + K+ +I+ L+ L HG+++ L++ P+++LLDEP Sbjct: 121 LFGSR--KVNDIVVRTADAFGLAPWLDTKGSSLPHGRRKLLDVASAFALHPKVMLLDEPT 178 Query: 217 AGMSDAETARTAELLNELR-GKH----SIMVVEHDMGFVEEIAQGGKVTVLHEGSVLAEG 271 AG+S A+ E L LR KH +IM+VEHDM V + ++ + G +A+ Sbjct: 179 AGVSTADKHGVMETL--LRAAKHMGIEAIMLVEHDMDLVSRYST--RIIAMQAGKKIADL 234 Query: 272 NMRQVQSNERVIEVYLGR 289 + +NE +I + +G+ Sbjct: 235 PRDEFFANEEIISIVVGK 252 >gi|134096407|ref|YP_001101482.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 98.6 bits (244), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 126/243 (51%), Gaps = 12/243 (4%) Query: 47 LYLENITVSFDGFKAINNLNLDISVGELRCIIGPNGAGKTTMMDVITGKTRPTSGTAFFG 106 L ++ +T +D +++++++++ G++ CI+G NGAGK+T++ I G T P G + Sbjct: 4 LSVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILWN 63 Query: 107 QTIDLTKMTEYEIAHAGIGRKFQRPTVFEQHTVFENLELAMKMDKRVKTTLFARLSSEQI 166 +L + I +GI + VF + +V ENL L + V + R E++ Sbjct: 64 GR-NLAGEKTHAIIASGISCIPEGRKVFPRMSVAENLALGAFL---VTNSAVVR---ERL 116 Query: 167 GKIEEILKLIRLSGQEQRMAGLLSHGQKQWLEIGMLLMQEPQLLLLDEPVAGMSDAETAR 226 ++ EI RL + ++AG +S G++ + IG LM EPQLL++DEP G+S Sbjct: 117 ARVYEIFP--RLKERAAQLAGTMSGGEQAMVSIGRGLMAEPQLLVIDEPSLGLSPLYVKE 174 Query: 227 TAELLNELRGKH-SIMVVEHDMGFVEEIAQGGKVTVLHEGSVLAEGNMRQVQSNERVIEV 285 ++ + ++++VE + I+ G VL +G V+AEG ++ SN+ V Sbjct: 175 NFNVIRRINALGITVLLVEQNARQTLAISHYG--YVLSQGRVMAEGTAEELASNDDVRAA 232 Query: 286 YLG 288 Y G Sbjct: 233 YFG 235 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 96.7 bits (239), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/245 (30%), Positives = 123/245 (50%), Gaps = 22/245 (8%) Query: 49 LENITVSFDGFKAINNLNLDISVGELRCIIGPNGAGKTTMMDVITGKTRPTSGTAFFGQT 108 ++NI F F A+N+++L+ GEL ++GP+G GKTT++ +I G +P G Sbjct: 5 VKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVL---- 60 Query: 109 IDLTKMTEYEIAHAGIGRKFQRPTVFEQHTVFENLELAMKMDKRVKTTLFARLSSEQI-- 166 +D + + +G FQ +F+ TVFEN+ + RV+ A SE + Sbjct: 61 LDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGL----RVRPA--ATRPSESVIK 114 Query: 167 GKIEEILKLIRLSGQEQRMAGLLSHGQKQWLEIGMLLMQEPQLLLLDEPVAGMSDAETAR 226 K+ ++L+L++L R LS GQ+Q + + L EP++LLLDEP G DA+ + Sbjct: 115 EKVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPF-GALDAKVRK 173 Query: 227 TAELLNELRGKH-----SIMVVEHDMGFVEEIAQGGKVTVLHEGSVLAEGNMRQVQSNER 281 EL LR H + + V HD E+A ++ ++++G V G + V +N Sbjct: 174 --ELRRWLRRLHDELHVTSIFVTHDQEEALEVAD--QIVLMNKGHVEQIGAPKDVYNNPA 229 Query: 282 VIEVY 286 VY Sbjct: 230 SPFVY 234 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.135 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 517,768 Number of extensions: 20264 Number of successful extensions: 168 Number of sequences better than 1.0e-08: 36 Number of HSP's gapped: 146 Number of HSP's successfully gapped: 37 Length of query: 289 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 208 Effective length of database: 733,452 Effective search space: 152558016 Effective search space used: 152558016 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)