BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4607.p (538 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093665|ref|YP_001098740.1| branched chain amino acid ABC t... 99 4e-22 gi|134095639|ref|YP_001100714.1| high-affinity branched-chain am... 90 4e-19 gi|134096410|ref|YP_001101485.1| high-affinity branched-chain am... 81 2e-16 gi|134095849|ref|YP_001100924.1| high-affinity branched-chain am... 74 2e-14 >gi|134093665|ref|YP_001098740.1| branched chain amino acid ABC transporter permease [Herminiimonas arsenicoxydans] Length = 293 Score = 99.4 bits (246), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 88/291 (30%), Positives = 145/291 (49%), Gaps = 8/291 (2%) Query: 242 FAGKLFYGISLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYT-TYVCQLVFRKFFP 300 F L G+ +VL L A GL + FG+ IIN+A G + +GAY +V K P Sbjct: 4 FFNILLAGVFQAAVLFLVASGLQLIFGVQRIINLACGSIYALGAYFGIFVTSWALSKGLP 63 Query: 301 GAIDAYLVVALPAAFIVAAAVGIALERLVIRWLYGRPLE-TLLCTWGISLMLMQCVRSIF 359 + ++ L A IV +GI LERL IR +Y RP LL T+ + LM +R + Sbjct: 64 VHLFPFV---LLGAGIVIGLIGIPLERL-IRTIYNRPESFQLLLTFAVMLMFQDVLRFFW 119 Query: 360 GAQNVEVANPSWMSGGVTVLGSLVLSYNRIVIVFFALFVVFAVWLILNKTRLGLFVRAVT 419 GA ++ N S G ++ G + +YN +VI A+ + + L KT+ G +RA Sbjct: 120 GADPQQLPNVSMTFGILSAFGVSMPTYNVMVIAV-AVSLAIGMAYFLGKTKTGKILRATA 178 Query: 420 QNRRMADCVGVSTGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLG 479 +NR + +G++ ++ +M F LG + +GG + ++G +V++F VVV+G Sbjct: 179 ENRETSAAMGINVTRVYVMVFTLGTMLGTIGGALVIPNAAASLEMGVELVVEAFAVVVIG 238 Query: 480 GVGQLAGTVIAAFGLGEVNKFLEPMAGAVLAKIAILVFIIVFIQKRPQGLF 530 G+G + G + A +G + L M +AI ++ + +P GL+ Sbjct: 239 GLGSMKGAAVGALIVGLIRA-LSAMYYPEAEILAIYAIVLAVLIWKPAGLY 288 >gi|134095639|ref|YP_001100714.1| high-affinity branched-chain amino acid ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 309 Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 85/304 (27%), Positives = 150/304 (49%), Gaps = 21/304 (6%) Query: 242 FAGKLFYGISLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKF--- 298 F ++ G+ LGS+ L ALG + +G++ +IN AHG++LMIGA + Sbjct: 4 FIQQIINGLVLGSMYALVALGYTMVYGVLNLINFAHGDVLMIGAMAGLTILKMLNTVAPD 63 Query: 299 FPGAIDAYLVVALPAAFIVAAAVGIALERLVIRWLYGRP-LETLLCTWGISLMLMQCVRS 357 PG + L++A+ A V AV + +ER+ R L P L L+ G+S++L Sbjct: 64 LPGIVK--LIIAILGAIPVCVAVNVLIERVAYRRLRNAPRLAPLITAIGVSILLQTFAMM 121 Query: 358 IFGAQNVEVANPSWMSGG-VTVLGSLVLSYNRIVIVFFALFVVFAVWLILNKTRLGLFVR 416 I+G + P M G + +LG+L+ S +++++ A + + L++ KT+LG +R Sbjct: 122 IWGRSPLPF--PQVMPGEPLHILGALI-SPTQVMLLILAAASMLLLALLIEKTKLGRAMR 178 Query: 417 AVTQNRRMADCVGVSTGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYI--VDSFM 474 A +N R+A +GV + ++ +MTF +G +A + GV + G++ + +F Sbjct: 179 ATAENPRVAGLMGVDSNRVIVMTFVIGATLAAIAGVMWAA-NYSSAQFAMGFVPGLKAFS 237 Query: 475 VVVLGGVGQLAGTV--------IAAFGLGEVNKFLEPMAGAVLAKIAILVFIIVFIQKRP 526 VLGG+G + G + I + G G + G+ I V +I+ + RP Sbjct: 238 AAVLGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGGFLGSHYQDIFAFVVLIIVLTLRP 297 Query: 527 QGLF 530 G+ Sbjct: 298 SGIM 301 >gi|134096410|ref|YP_001101485.1| high-affinity branched-chain amino acid ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 294 Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 119/241 (49%), Gaps = 10/241 (4%) Query: 258 LAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDAYLVVALPAAFIV 317 + A+G + FG++ +I +HG+ LM+GA+ G+ L+ + AA V Sbjct: 5 MVAVGFTLFFGVLDVIKFSHGDTLMVGAFAGLTASTGVLMLDIGSPWIRLLAVVLAAVCV 64 Query: 318 AAAVGIALERLVIRWLY-GRPLETLLCTWGISLMLMQCVRSIFGAQNVEVANPSWMSGGV 376 +G A+ + ++ L+ PL TLL T + ++ + VR + + PS + Sbjct: 65 TGLLGAAIAKWLVLPLHKAPPLNTLLATLMLGTVMREAVRLFYPDGSNSQPFPSLLPTDA 124 Query: 377 TVLGSLVLSYNRIVIVFFALFVVFAVWLILNKTRLGLFVRAVTQNRRMADCVGVSTGKID 436 G L + ++++ L ++ V ++ +TRLG+ +RAV Q+ A +G++ + Sbjct: 125 IEFGGFALRADNVILLLSGLAIIAGVHFLITRTRLGMAIRAVAQDGETARLMGINFEAVV 184 Query: 437 MMTFGLGCGIAGLGGVA----LSQLG-NVGPDLGQGYIVDSFMVVVLGGVGQLAGTVIAA 491 ++TF LG G+A L GV +++ NVG LG V F +LGG+G + G +I Sbjct: 185 LLTFALGSGMAALAGVMNGLYYNEINFNVGLLLG----VIGFAAAILGGLGNIYGAIIGG 240 Query: 492 F 492 F Sbjct: 241 F 241 >gi|134095849|ref|YP_001100924.1| high-affinity branched-chain amino acid ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 291 Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 71/287 (24%), Positives = 134/287 (46%), Gaps = 13/287 (4%) Query: 249 GISLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDAYLV 308 G+S+G++ L ALG I + +N AHG+++M+GA V +V F + Y Sbjct: 11 GLSIGAIYSLVALGFYIMWSACRSVNFAHGDVMMVGA----VLAVVSNDF---GLSPY-- 61 Query: 309 VALPAAFIVAAAVGIALERLVIRWLY--GRPLETLLCTWGISLMLMQCVRSIFGAQNVEV 366 + +P + + G+ +ER +R + +L T I +M+ V FG+ + Sbjct: 62 IGIPLSIVACVLYGVLVERFAVRPYTKEANAIGWMLTTIAIGIMVESFVTIKFGSFARAL 121 Query: 367 ANPSWMSGGVTVLGSLVLSYNRIVIVFFALFVVFAVWLILNKTRLGLFVRAVTQNRRMAD 426 +P + +T+ G+ + ++ +F LF++ + + +T LG +RAV NR A Sbjct: 122 PSPG-VDKPITIFGAGIYLQEMLIPLFVILFMI-GLEVFYRRTMLGRAMRAVAFNRIAAG 179 Query: 427 CVGVSTGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAG 486 +G++ G + +F L G+ G+ G+ + + V +G + F V ++ + G Sbjct: 180 MMGINVGMVTSFSFALAAGLGGIAGILIGPIIQVSSTMGVLIGLKGFAVAIMASITSARG 239 Query: 487 TVIAAFGLGEVNKFLEPMAGAVLAKIAILVFIIVFIQKRPQGLFALK 533 VI G + KF+E + ++ +I+ + PQGLF K Sbjct: 240 VVITGLLYGVLEKFVEGYISSAAREVVGFSIMILVLLMFPQGLFGRK 286 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.140 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 839,669 Number of extensions: 29302 Number of successful extensions: 142 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 134 Number of HSP's successfully gapped: 5 Length of query: 538 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 452 Effective length of database: 716,977 Effective search space: 324073604 Effective search space used: 324073604 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)