BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4606.p
         (417 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093666|ref|YP_001098741.1| hypothetical protein HEAR0390 [...    69   6e-13

>gi|134093666|ref|YP_001098741.1| hypothetical protein HEAR0390
           [Herminiimonas arsenicoxydans]
          Length = 429

 Score = 68.6 bits (166), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 122/258 (47%), Gaps = 14/258 (5%)

Query: 3   RRTVLKATALGAFALAASSWLP-SAFAADT-IKVGILHSLSGTMA-ISETSLKDVALMTI 59
           RR+VLKA   G  A+ AS +L   AFA +  I++GI+    G    I E  L+ V   T 
Sbjct: 10  RRSVLKAIGAGV-AVGASGFLGVPAFAQNKPIRIGIIAPRGGVAGTIGECGLRGVEWTTA 68

Query: 60  DEINAAGGVMGKKLEPVVVDPASNWPLFAEKARQLISQDKVSVVFGCWTSVSRKSVLPVF 119
             INAAGG+ G+K+E V+ +  S      ++ R+L+ Q+KV  V G  +S    ++ P  
Sbjct: 69  -RINAAGGIGGRKVELVIQEETSPKDTI-DRFRKLVLQEKVDCVQGIVSSGVSLALAPAA 126

Query: 120 KE--LNSLLFYPVQYEG--EELEKNVFYTGAAPNQ-QAIPAVEYLMSKEGGGAKRFVLLG 174
           ++  + ++ +     +G  E + K  +   +  N+ +A+ A    +    G  KR   + 
Sbjct: 127 EDSRMPTIFWDGTTQDGVKETMPKPKYVFRSTDNECEAVMASLLAIKHFKGKFKRIACVN 186

Query: 175 TDYVYPRTTNKILRAFLHSKGVKDSDIDEVYTPFGHSDYQTIVANIKKFSAGGKTAVIST 234
            DY Y R T    +A L   G++   + E ++  G+ D   + +N+    A     + S+
Sbjct: 187 PDYSYGRNTWTAFQALLKKYGIEHEVVSEQWSKIGNLD---LTSNVAALKAAKPDLIFSS 243

Query: 235 INGDSNVPFYKELGNAGL 252
           +       F K+  NAGL
Sbjct: 244 LLFADLPVFMKQAHNAGL 261


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.130    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 780,611
Number of extensions: 32354
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 333
Effective length of database: 723,567
Effective search space: 240947811
Effective search space used: 240947811
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)