BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4604.p (573 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein... 185 6e-48 gi|134095595|ref|YP_001100670.1| hypothetical protein HEAR2418 [... 159 4e-40 gi|134095859|ref|YP_001100934.1| hypothetical protein HEAR2691 [... 150 2e-37 gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [... 149 3e-37 gi|134096058|ref|YP_001101133.1| hypothetical protein HEAR2898 [... 122 5e-29 >gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] Length = 519 Score = 185 bits (469), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 97/193 (50%), Positives = 138/193 (71%), Gaps = 3/193 (1%) Query: 383 QVALRT--RELERANRKLEALSATDGLTGVANRRRFDEALVNELRRSVRSGHALALLMLD 440 Q LRT +LER+N +L AL+ D LTG+ANRRRFD AL +E R++R+ +LAL+MLD Sbjct: 326 QSELRTARDDLERSNGELAALALLDSLTGLANRRRFDAALDDEFARAMRNQTSLALIMLD 385 Query: 441 VDYFKKYNDRYGHLAGDECLRIVARVLQKSSRRATDLVARYGGEEFSVIIAESDTAHALQ 500 VD+FKKYNDRYGH GDECL+ ++++L+ ++ R DLVARYGGEEF +++ +D A A Sbjct: 386 VDHFKKYNDRYGHPQGDECLKEISKILKTATARTGDLVARYGGEEFVILLPGTDRAGAAA 445 Query: 501 QAENICQAIFELKLPHADSPFGYITASIGVASLLPD-EHTSAEQMLRIADQALYHAKYQG 559 AE + AI L + HA++P G +TAS+G+A+L+P + S +Q++ ADQALY AK G Sbjct: 446 VAERVRLAIQALNMEHAETPDGIVTASLGIAALIPQRQQNSPQQLVHAADQALYKAKEDG 505 Query: 560 RNRVVLGSDATQD 572 RN+ + + A+ D Sbjct: 506 RNQSCISTQASAD 518 >gi|134095595|ref|YP_001100670.1| hypothetical protein HEAR2418 [Herminiimonas arsenicoxydans] Length = 313 Score = 159 bits (401), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 79/184 (42%), Positives = 114/184 (61%) Query: 380 LEQQVALRTRELERANRKLEALSATDGLTGVANRRRFDEALVNELRRSVRSGHALALLML 439 LEQ++ R LER LE L D LTG+ +R+ F++ L + + + +L ++ + Sbjct: 125 LEQRLRKERRLLERDKENLEQLVVHDTLTGIYSRKYFEDQLRTRWDQLIDTQESLVMMFI 184 Query: 440 DVDYFKKYNDRYGHLAGDECLRIVARVLQKSSRRATDLVARYGGEEFSVIIAESDTAHAL 499 DVDYFK +ND YGH+AGD+ LR VA +L S RR ++ VAR+GGEEF V+ E A+ Sbjct: 185 DVDYFKGFNDTYGHIAGDDALRKVASILDDSLRRDSEFVARFGGEEFIVLATEMTAEQAI 244 Query: 500 QQAENICQAIFELKLPHADSPFGYITASIGVASLLPDEHTSAEQMLRIADQALYHAKYQG 559 AEN+C+++ +L +PHA SP ++T S GV + P E +L AD ALY AK +G Sbjct: 245 MHAENLCRSVRDLDIPHAASPHQFLTISCGVVRMKPSSMAQPEVLLEQADSALYQAKARG 304 Query: 560 RNRV 563 RN+V Sbjct: 305 RNQV 308 >gi|134095859|ref|YP_001100934.1| hypothetical protein HEAR2691 [Herminiimonas arsenicoxydans] Length = 280 Score = 150 bits (378), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 72/169 (42%), Positives = 108/169 (63%), Gaps = 1/169 (0%) Query: 396 RKLEALSATDGLTGVANRRRFDEALVNELRRSVRSGHALALLMLDVDYFKKYNDRYGHLA 455 ++LE LS DGLTGVANRR FD + E + + L+++MLD+DYFK+YND YGH+ Sbjct: 108 KELETLSFKDGLTGVANRRMFDSIMAAEWANAKLNHQPLSVIMLDIDYFKQYNDHYGHIQ 167 Query: 456 GDECLRIVARVLQKSSRRATDLVARYGGEEFSVIIAESDTAHALQQAENICQAIFELKLP 515 GD+CL+ VA +L ++RR+ D AR+GGEEF +++ E+D +A+ AE I + K+P Sbjct: 168 GDDCLKRVANILSSATRRSRDFFARFGGEEFILVLPETDELNAINIAERCRTLICKEKIP 227 Query: 516 HADSP-FGYITASIGVASLLPDEHTSAEQMLRIADQALYHAKYQGRNRV 563 H S IT S+GV +++P + + + D+ LY AK +GRN + Sbjct: 228 HEKSEVIPMITVSLGVGTVIPTDKDDPIRFIEEVDKRLYQAKQRGRNCI 276 >gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [Herminiimonas arsenicoxydans] Length = 568 Score = 149 bits (377), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 100/257 (38%), Positives = 139/257 (54%), Gaps = 14/257 (5%) Query: 316 ASLLLSALIARSISLPLQRLVGAMREAGSGDTTVR-VEQAGDDEITVLSRKFNEMAGKLQ 374 A L L+ ++A IS P++ L R SG+ V E+ E+ LS M+ L Sbjct: 308 AFLFLAWIVANRISRPVEDLTRTARRIESGEKEVGFAEKFWARELQRLSDALRGMSNTLI 367 Query: 375 QHKE-------ELEQQVALRTRELERANRKLEALSATDGLTGVANRRRFDEALVNELRRS 427 Q +E ELE +V+ RT EL+ N LE L+ TD LTG+ANR +E L E R Sbjct: 368 QQREALAQSNQELEAKVSARTAELQELNITLEQLARTDALTGLANRMHTNERLAEEFARF 427 Query: 428 VRSGHALALLMLDVDYFKKYNDRYGHLAGDECLRIVARVLQKSSRRATDLVARYGGEEFS 487 RS +LMLDVD+FK+ ND YGH GDE L+ VA +L + R+ TD V R+GGEEF Sbjct: 428 KRSKIPYCILMLDVDFFKRVNDIYGHGVGDEVLKHVASILSATVRK-TDFVGRHGGEEFL 486 Query: 488 VIIAESDTAHALQQAENICQAIFELKLPHADSPFGYITASIGVASLLPDEHTSAEQMLRI 547 I+ +D++ A+ AE I I + P G +T SIGV + ++ + R Sbjct: 487 SILPMTDSSAAMVVAEKIRNTIESTPI----GPVGNLTVSIGVQEVTVNDINEDVAVTR- 541 Query: 548 ADQALYHAKYQGRNRVV 564 AD+ +Y AK GRN+V+ Sbjct: 542 ADECMYQAKKSGRNKVI 558 >gi|134096058|ref|YP_001101133.1| hypothetical protein HEAR2898 [Herminiimonas arsenicoxydans] Length = 314 Score = 122 bits (306), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 73/176 (41%), Positives = 106/176 (60%), Gaps = 8/176 (4%) Query: 395 NRKLEALSATDGLTGVANRRRFDEALVNELRRSVRSGHALALLMLDVDYFKKYNDRYGHL 454 N +L+ + TD LTGV NRR + L+ E+ R+ R GH L+ + +D+D+FKK ND YGH Sbjct: 138 NERLQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGHTLSAMYIDLDFFKKVNDNYGHQ 197 Query: 455 AGDECLR-IVARVLQKSSRRATDLVARYGGEEFSVIIAESDTAHALQQAENICQAIFELK 513 GDE LR + AR+ K+ R +D + R+GGEEF V++ ++ AL AE + +I Sbjct: 198 GGDEVLREVAARI--KAELRLSDALGRFGGEEFVVLLIDAGMEAALAVAERMRSSIANRP 255 Query: 514 LPHADSPFGYITASIGVASLLPDEH-----TSAEQMLRIADQALYHAKYQGRNRVV 564 L + ++ SIGV++L E T A+Q+L ADQALY AK GRN+V+ Sbjct: 256 LVLSSGEQLRLSVSIGVSTLQAIERKDEVATIAQQLLAKADQALYLAKQGGRNKVM 311 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.134 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 950,071 Number of extensions: 35572 Number of successful extensions: 219 Number of sequences better than 1.0e-08: 30 Number of HSP's gapped: 166 Number of HSP's successfully gapped: 30 Length of query: 573 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 486 Effective length of database: 713,682 Effective search space: 346849452 Effective search space used: 346849452 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)