BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4602.p (407 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095839|ref|YP_001100914.1| bicyclomycin resistance protein... 145 4e-36 gi|134093380|ref|YP_001098455.1| putative transporter [Herminiim... 69 3e-13 gi|134094220|ref|YP_001099295.1| major facilitator superfamily m... 58 1e-09 gi|134094141|ref|YP_001099216.1| MFS family transporter [Hermini... 55 6e-09 >gi|134095839|ref|YP_001100914.1| bicyclomycin resistance protein [Herminiimonas arsenicoxydans] Length = 422 Score = 145 bits (366), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 89/270 (32%), Positives = 142/270 (52%), Gaps = 6/270 (2%) Query: 19 VLAALTAMGALAIDMYLPSFTAIAQDLGVGTNLVQLTLASFLIGLAVGQMFYGPLSDRFG 78 +LAAL+ +G +ID YLP+F I LG VQ TL ++L AV +++G LSD FG Sbjct: 25 MLAALSMLGPFSIDTYLPAFPNIQTSLGASALEVQQTLTAYLFSFAVMILWHGALSDAFG 84 Query: 79 RKPPLFFGIALYFVCSLLCSFAQNIETLIVLRLFQGLGGSAGMVIPRAMVRDRMGAEGSA 138 R+ + +A++ V +L C+ A +IE L R+ QG+ AG+VI RA++RD + Sbjct: 85 RRNIILVSLAVFAVATLGCAAAHSIEYLWAFRMLQGISAGAGVVIGRAIIRDLYAGAEAE 144 Query: 139 KAFSMLMLVFGLAPILAPFIGGLMLVFANWRGIFVVLTLFGLLCMVGTRKYLTETVDVSR 198 K S++ ++F +AP +AP +GG ++ +WR IF+ L + +L ++ K L E++ + Sbjct: 145 KLLSLVTMIFSIAPAIAPMLGGWIVKRMDWRAIFLALFAYAVLLLLYCYKRLPESLPPEK 204 Query: 199 AEPLHLGRTLRQYWGLLRHRQFMSFVLCGGLVQ---AGMFAYIAGGPFVVIELHGVKPQY 255 P + + Y + R F L G V AGMF Y+A P ++E G+ P Sbjct: 205 RHPFNPQFLYQSYKRVFRSPLFH---LKAGAVAFNFAGMFLYVAAAPVFLVEHLGLGPDQ 261 Query: 256 FGFVFASNAIGLIAASQINARLVVKRSAER 285 FG+ F G+ + RL +R Sbjct: 262 FGWQFVPTVAGIFCGALSANRLAGNIPLDR 291 >gi|134093380|ref|YP_001098455.1| putative transporter [Herminiimonas arsenicoxydans] Length = 460 Score = 69.3 bits (168), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 5/165 (3%) Query: 40 AIAQDLGVGTNLVQLTLASFLIGLAVGQMFYGPLSDRFGRKPPLFFGIALYFVCSLLCSF 99 +I + G+ T L +S +G+ +G G L+D++GRKP + + + V SL C F Sbjct: 53 SIKAEFGLSTAQAGLLASSSFLGMFLGAAIAGMLADKYGRKPVFQWSMVFWGVGSLACGF 112 Query: 100 AQNIETLIVLRLFQGLGGSAGMVIPRAMVRDRMGAEGSAKAFSMLMLVFGLAPILAPFIG 159 AQ+++ L++ R+ G G I +MV + + A+ K ++L + L I A + Sbjct: 113 AQDVDQLMIFRVILGFGMGMEFPIGLSMVSEIVPAKSRGKYVAILEGFWPLGFIAAGILA 172 Query: 160 GLMLVFANWRGIFVVLTLFGLLCMVGTRKYLTET----VDVSRAE 200 L L WRGIF+ L++ V R+Y+ E+ +V R E Sbjct: 173 YLTLPLIGWRGIFIALSVPAAFVFV-IRRYVPESPRWLEEVGRNE 216 >gi|134094220|ref|YP_001099295.1| major facilitator superfamily multidrug transporter; membrane protein [Herminiimonas arsenicoxydans] Length = 517 Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 72/169 (42%), Gaps = 4/169 (2%) Query: 37 SFTAIAQDLGVGTNLVQLTLASFLIGLAVGQMFYGPLSDRFGRKPPLFFGIALYFVCSLL 96 S AI+ DLGV + SF + A+ G L+ RFG+ I L+ + S L Sbjct: 41 SIPAISGDLGVSPQQGTWVITSFAVANAISVPLTGWLTQRFGQVRLFISSILLFVLASCL 100 Query: 97 CSFAQNIETLIVLRLFQGLGGSAGMVIP--RAMVRDRMGAEGSAKAFSMLMLVFGLAPIL 154 C A +IE LI R+ QG AG +IP +A++ S A + + +API+ Sbjct: 101 CGLAPSIEILIAARVLQG--AVAGPMIPLSQALLLSSYPPAKSGMALAFWGMTTLVAPIM 158 Query: 155 APFIGGLMLVFANWRGIFVVLTLFGLLCMVGTRKYLTETVDVSRAEPLH 203 P +GG + W IF + G+ T E + P+ Sbjct: 159 GPLLGGWISDNYTWPWIFYINIPIGIFAAWATWSIYRERESKTYKLPID 207 >gi|134094141|ref|YP_001099216.1| MFS family transporter [Herminiimonas arsenicoxydans] Length = 402 Score = 55.1 bits (131), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 53/213 (24%), Positives = 90/213 (42%), Gaps = 11/213 (5%) Query: 36 PSFTAIAQDLGVGTNLVQLTLASFLIGLAVGQMFYGPLSDRFGRKPPLFFGIALYFVCSL 95 P +AQ+ + V + +F I Q+F+GPL DRFG+ + + + +L Sbjct: 38 PLLPRLAQEFDISLGSVSYVITAFSIAYGFSQLFFGPLGDRFGKYLVIAWACVACTLTAL 97 Query: 96 LCSFAQNIETLIVLRLFQGLGGSAGMVIPRAMVRDRMGAEGSAKAFSMLML--VFGLAPI 153 LC+ A N LIV RL G +A + + A + D + + + ++ + G++ Sbjct: 98 LCALAPNYPLLIVARLLAGATAAAIVPLSMAWIGDVVPYDRRQPVLAQFLIGQIVGIST- 156 Query: 154 LAPFIGGLMLVFANWR----GIFVVLTLFGLLCMVGTRKYLTETVDVSRAEPLHLGRTLR 209 GGL + +WR GI + L L R+ + +AE L R + Sbjct: 157 -GVLFGGLAADYFSWRVPFFGISLCFVLIALTLFSFNRRLPAYAMTTHKAEGSALRRMVN 215 Query: 210 QYWGLLR---HRQFMSFVLCGGLVQAGMFAYIA 239 ++ +L R + V G G FA+IA Sbjct: 216 EFGQILSLPWARVVLVTVFLEGGFLYGAFAFIA 248 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.330 0.144 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 714,054 Number of extensions: 29057 Number of successful extensions: 156 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 7 Length of query: 407 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 323 Effective length of database: 723,567 Effective search space: 233712141 Effective search space used: 233712141 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)