BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4601.p (231 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094688|ref|YP_001099763.1| GntR family transcriptional reg... 72 3e-14 gi|134095895|ref|YP_001100970.1| GntR family transcriptional reg... 56 2e-09 >gi|134094688|ref|YP_001099763.1| GntR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 220 Score = 71.6 bits (174), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 99/217 (45%), Gaps = 24/217 (11%) Query: 9 QTLQRQILSGTYAPGAMLPSQRELAESMGISRASLREALSMLEALGFIRSVPGKGTLVSE 68 + ++ I G PG L + ELA+ G+SR +REAL L ++G I P +G +V+E Sbjct: 10 EAIEEMIAVGKLPPGHHL-DETELAKEFGVSRTPIREALIQLASMGIIVIRPRRGAIVAE 68 Query: 69 RQEGRVAPPQPPAGEGGTSATALDLAAVFQLRYTLESAAAALAARHIS--AHATPRLWGI 126 + P Q L +F++ LE+ A LAAR +S HAT L Sbjct: 69 -----IGPQQ--------------LIEMFEVMAELEAMCARLAARRMSPAGHAT--LKAT 107 Query: 127 QARFEDALKNLDLVSASHADLEFHQLVAELSGNPAFSQVVRQFERPISHSLRVPFADRER 186 E+A + D + + + EFHQ + S N + R +R + R+ R R Sbjct: 108 HLACEEARDSADSDAYFYKNEEFHQQIYIGSQNSFLEEQARVLQRRLRPYRRLQLRVRNR 167 Query: 187 IWAPAIEHRAIAAAISAGDIEAARLAMQQHIVNAAQR 223 + A EH A+ AI G E A ++QHI+ QR Sbjct: 168 VQASFDEHGAVVDAIIEGKGELAAELLRQHIMIQGQR 204 >gi|134095895|ref|YP_001100970.1| GntR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 247 Score = 55.8 bits (133), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 92/219 (42%), Gaps = 26/219 (11%) Query: 9 QTLQRQILSGTYAPGAMLPSQRELAESMGISRASLREALSMLEALGFIRSVPGKGTLVSE 68 + LQ I+ G APG L ++RE+ E +GISR LREA+ +L + G I P +G VS+ Sbjct: 30 EHLQNLIIEGVLAPGMKL-NEREVCERLGISRTPLREAMKVLASEGLIDIAPNRGAFVSK 88 Query: 69 RQEGRVAPPQPPAGEGGTSATALDLAAVFQLRYTLESAAAALAARHISAHATPRLWGIQA 128 + ++ F++ LE+ + LAA IS + + Sbjct: 89 MNDN-------------------EIWEAFEMMSGLEALSGELAAERISPAEIADIKVLHE 129 Query: 129 RFEDALKNLDLVSASHADLEFHQLVAELSGNPAFSQVVRQFERPISHSLRVPFADRERIW 188 DL + H + E + N Q+ R + +LR +E W Sbjct: 130 AMLVCRAQNDLPGYYSRNQTIHNKINEAARNSMLRQIYLSINRRLL-ALRFKSNFQEAKW 188 Query: 189 APAI-EHRAIAAAISAGDIEAARLA--MQQHIVNAAQRV 224 AI EH + A+ + D RLA ++QH+++ V Sbjct: 189 DRAIHEHDEMIKALESRD--GKRLAAILRQHLLDKRDSV 225 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.129 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 347,107 Number of extensions: 10994 Number of successful extensions: 40 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 2 Length of query: 231 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 152 Effective length of database: 740,042 Effective search space: 112486384 Effective search space used: 112486384 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)