BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4600.p
         (550 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096447|ref|YP_001101522.1| putative dipeptide transport bi...   132   4e-32

>gi|134096447|ref|YP_001101522.1| putative dipeptide transport
           binding transmembrane protein [Herminiimonas
           arsenicoxydans]
          Length = 528

 Score =  132 bits (332), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 136/458 (29%), Positives = 200/458 (43%), Gaps = 75/458 (16%)

Query: 70  LSKADKASELIADLALSWQVEPKDKTKWIFKLRPGVKFHDGSPFNADAVVWNVNKVLDKN 129
           L   D   +L+  LA SW+    D T W FKLR  VKFHDGSPF AD V+++    LD+ 
Sbjct: 66  LVNVDANGKLVPGLATSWRAV--DATTWEFKLRRDVKFHDGSPFTADDVIFS----LDRP 119

Query: 130 AVQFDPSQVGVTASRMPTLRSARKIDDLTVELTTSEPDSFLPINLTNLFMASPSQWEKKL 189
           A     S  G   +    + + + +D  TV L T+ P   L ++++ +F+ S    EK  
Sbjct: 120 AKL--TSSPGPFTAYTKQIVAKKIVDPYTVRLMTAAPYGPLALDMSTVFIVSKKAAEK-- 175

Query: 190 AAVPASVTDKAERSKQAWAAFAADASGTGPFKMAKFVPRERLEVVKNDGYWDPARRPKID 249
                + TD     K           GTGP+K   F   +R+EV +ND YW    +   D
Sbjct: 176 -----ASTDDFNNGKA--------LIGTGPYKFLSFKRGDRIEVTRNDQYW--GGKSDWD 220

Query: 250 RVVMLPLPEANSRTAALMSGQVDWIEAPAPDALDAIKARGFKIYSNPQPHVWP---WQLS 306
           +V    +  +  R AAL+SG VD IE      L  +K+     +S  Q   W    W+L 
Sbjct: 221 KVTFRIITNSAPRLAALLSGDVDAIEGVPTADLSRLKSNA--KFSFAQKISWRTIFWELD 278

Query: 307 F---------------LPGSPWLDKRVRHAANLCVNRPAM-KQLLGGLMGEATGTVEPGH 350
                           LP +P  D RVR A +  +NR A+ ++ + GL   A+  V PG 
Sbjct: 279 QSPGASRYVTDKSGKPLPNNPLHDVRVRQAMSKAINRQALVERTMEGLAVPASNIVSPG- 337

Query: 351 PWRGNPSFQIK-YDPAAAKKLMTEAGYSAAKPLTVKVQISASGSGQMQPLPMNEFMQQNL 409
            +  N + +++ YDP  AKKL+ +AGY     LT+         G       +E + Q +
Sbjct: 338 IFGYNDALKVEVYDPEGAKKLLAQAGYPHGFALTIH--------GPNDRYINDEQVVQTV 389

Query: 410 KECFFDVQFDVIEWNTLYTNWRIGAKDPSAHGANAINVSFA-------SMDPFFAMVRFV 462
                  QF    WN +    ++     S + A A    F+       ++   F +   V
Sbjct: 390 ------AQF----WNRIGIQTKVATLPLSVYFAKARAGEFSVSLLGWGTLAGDFGLRTLV 439

Query: 463 DTKAAPP--TSNNWGFYSNPEVDALIAKARTTFDPKQR 498
            T        S NWG YSNP VD LIA + ++ D  +R
Sbjct: 440 GTPNVETGWGSWNWGKYSNPAVDKLIASSLSSVDQGKR 477


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.132    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,103,656
Number of extensions: 45895
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 464
Effective length of database: 716,977
Effective search space: 332677328
Effective search space used: 332677328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)