BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4598.p
         (301 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096445|ref|YP_001101520.1| peptide ABC transporter [Hermin...   142   3e-35
gi|134095502|ref|YP_001100577.1| oligopeptide ABC transporter me...    71   6e-14

>gi|134096445|ref|YP_001101520.1| peptide ABC transporter
           [Herminiimonas arsenicoxydans]
          Length = 297

 Score =  142 bits (357), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 94/254 (37%), Positives = 141/254 (55%), Gaps = 10/254 (3%)

Query: 57  APWVMPGDPFAAS----MFSRLKP-----IGTVGHLLGTDELGRDMFSRLLLGGRLSLFM 107
           AP + P +P+  +    M SRL P      G+  +LLGTDE GRDM S +L G R+S+ +
Sbjct: 40  APVIAPQNPYDLTQIDIMDSRLAPGAQNLDGSFTYLLGTDEQGRDMLSAILYGVRISIIV 99

Query: 108 GITPVLLAFVIGSALGIVAGYAGGFTNTIIMRSIDILYAFPSVLLAIALSGALGAGIFNA 167
           G+    +A +IG  LG+ AGY GG T   IMR  DI  +FP +L+A+ L   +G GI   
Sbjct: 100 GVASTAIALLIGLTLGLCAGYFGGRTEGFIMRVADIQLSFPPILVALILLALMGPGIDKI 159

Query: 168 LTSLTIVFVPQIARIAESVTTQVRRSDYVDAARASGASAFTIVRAHVLGNVLGPIFVYST 227
           + +L  V     AR A S     R+ +Y++AAR  G S   IV  H+L N L P+ V + 
Sbjct: 160 VIALIAVQWAYYARTARSAALVERKKEYMEAARGLGLSPLRIVFRHLLPNCLPPLIVIAA 219

Query: 228 SLISVSMILASGLSFLGLGVKPPEPEWGLML-NTLRTAIYTQPWVAALPGAFIFVTSISF 286
             ++ ++ L + LSFLGLG+   EP  GL++ N     +  + W++  PG  + +T +S 
Sbjct: 220 LQVASAISLEATLSFLGLGLPVTEPSLGLLIANGFDYMMSGKYWISVFPGIALLLTVVSI 279

Query: 287 NLLSDGLRSAMEVK 300
           NL++D LR  +  +
Sbjct: 280 NLVADQLRDVLNPR 293


>gi|134095502|ref|YP_001100577.1| oligopeptide ABC transporter
           membrane protein [Herminiimonas arsenicoxydans]
          Length = 354

 Score = 71.2 bits (173), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 105/220 (47%), Gaps = 1/220 (0%)

Query: 82  HLLGTDELGRDMFSRLLLGGRLSLFMGITPVLLAFVIGSALGIVAGYAGGFTNTIIMRSI 141
           + LGTD+ GRD+ +RLL G R+S+  G+       ++G   G + GY  G T+    R +
Sbjct: 134 NWLGTDDRGRDVVARLLYGFRVSVLFGLALTFTGVLLGLLTGAIQGYFAGKTDLFFQRFM 193

Query: 142 DILYAFPSVLLAIALSGALGAGIFNALTSLTIVFVPQIARIAESVTTQVRRSDYVDAARA 201
           +I  + P + L I  +      I   L  L++     ++    +   + R  +YV AARA
Sbjct: 194 EIWGSMPELYLLIIFASIFQPSIGLLLILLSLFGWMGLSDYVRADFLRNRNLEYVQAARA 253

Query: 202 SGASAFTIVRAHVLGNVLGPIFVYSTSLISVSMILASGLSFLGLGVKPPEPEWGLMLNTL 261
            G S   I+  H+L N L P+  +    +S +++  + L FLGLGV       G +L   
Sbjct: 254 LGLSNAQIIWRHILPNSLTPVVTFLPFRMSGAILALTSLDFLGLGVPASTASLGELLAQG 313

Query: 262 RTAIYTQPWVAALPGAFIFVTSISFNLLSDGLRSAMEVKQ 301
           +  +    W+A      + V  +    + D LR++++V++
Sbjct: 314 KNNL-DAWWIALSTFVVLTVMLLLLTNIGDALRNSLDVRR 352


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.325    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 468,737
Number of extensions: 15759
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 2
Length of query: 301
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 220
Effective length of database: 733,452
Effective search space: 161359440
Effective search space used: 161359440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)