BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4597.p (363 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter AT... 282 1e-77 gi|134096444|ref|YP_001101519.1| oligopeptide ABC transporter AT... 188 4e-49 gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter AT... 184 8e-48 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 135 3e-33 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 129 2e-31 >gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 336 Score = 282 bits (722), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 156/326 (47%), Positives = 203/326 (62%), Gaps = 10/326 (3%) Query: 20 QPLLGVRQLLKHF--PL----KQQGLPWLRGPANAVRAVDGVSFDIMKGETLGVVGESGC 73 QPLL ++ + K F PL + L + A V AVD V+ I GE +G+VGESGC Sbjct: 6 QPLLALQDVSKRFAQPLDTAARIANLFGAKKSAEVVHAVDQVTLTIHAGEVVGLVGESGC 65 Query: 74 GKSTTARVLMQLIKQDSGELVFDGQTVG-SRAMPLRQFRRQAQMVFQDSYSSLNPRMTIE 132 GKST R+ + L SG ++ G + S A RQ + QM+FQD Y+SLNPRM I+ Sbjct: 66 GKSTLGRMAVGLHTLSSGSRLWKGVNLEVSSAAERRQQQLGMQMIFQDPYASLNPRMRIQ 125 Query: 133 DSIAFAPIVHGL-PAREAIARARSLLARVGLQPERFAGRYPHELSGGQRQRVNIARALAL 191 D I AP+ HG+ PA E LL VGL P A R+PH+ SGGQR R+ IARALA+ Sbjct: 126 DVIGEAPVAHGMVPASEQTEYVARLLQTVGLDPA-LARRFPHQFSGGQRARIGIARALAV 184 Query: 192 EPRLVILDEAVSALDKSVEAQVLNLLLDLKQEFGLTYLFISHDLNVVRFISDRVLVMYLG 251 +P L++ DEAV+ALD S++AQVLNL + L+ E LTYLFISHDL VVR +SDRVL+MYLG Sbjct: 185 KPELLVCDEAVAALDVSIQAQVLNLFIKLRDELNLTYLFISHDLGVVRHVSDRVLIMYLG 244 Query: 252 QVVEVGPAEQVFDAPRHPYTRALLRSMPSMDPTRRTEQAPLAGDPPNPINPPPGCRFHTR 311 ++VE P ++F P HPYT ALL S P ++ ++ + + G+ P+P++PP GC FH R Sbjct: 245 RIVESSPTAELFARPNHPYTVALLASAPRLE-VKKIDFYAVKGEIPSPLHPPSGCHFHPR 303 Query: 312 CQFAQPVCQQRAPAFTEALPLHGVAC 337 C A P C P E P H AC Sbjct: 304 CPHAMPRCSVEQPLLKEIAPAHFSAC 329 >gi|134096444|ref|YP_001101519.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 321 Score = 188 bits (477), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 115/287 (40%), Positives = 167/287 (58%), Gaps = 15/287 (5%) Query: 49 VRAVDGVSFDIMKGETLGVVGESGCGKSTTARVLMQLI----KQDSGELVFDGQTVGSRA 104 V+AV+ VSF + G+ +G+VGESG GKS TA +M LI K +G+++ Q + RA Sbjct: 15 VKAVEDVSFSVAPGQIMGLVGESGSGKSMTAYSIMGLIDAPGKIVAGKILLKDQDL--RA 72 Query: 105 MPLRQFRR----QAQMVFQDSYSSLNPRMTIEDSIAFAPIVH-GLPAREAIARARSLLAR 159 + RR + M+FQD +LNP + I+ + A + H + A A AR L R Sbjct: 73 LSPEAMRRIRGNRIAMIFQDPMMTLNPVLRIDTQMMEAVLAHQDVGKATARAMARDALVR 132 Query: 160 VGL-QPERFAGRYPHELSGGQRQRVNIARALALEPRLVILDEAVSALDKSVEAQVLNLLL 218 VG+ P+ YPH+ SGG RQRV IA AL +P L+I DE +ALD +++ Q+L + Sbjct: 133 VGIASPDERLLAYPHQFSGGMRQRVAIAIALLNKPDLIICDEPTTALDVTIQGQILYEMQ 192 Query: 219 DLKQEFGLTYLFISHDLNVVRFISDRVLVMYLGQVVEVGPAEQVFDAPRHPYTRALLRSM 278 L +E G ++I+HDL+V+ ++D V VMY G++VE G ++V + P+HPYT L+ S Sbjct: 193 KLCRESGTALIWITHDLSVIAGLADAVCVMYAGKIVESGSVQEVLEQPQHPYTHGLIASS 252 Query: 279 PSMD-PTRRTEQAPLAGDPPNPINPPPGCRFHTRCQFAQPVCQQRAP 324 PS + P Q P G P+ +N P GC F TRC+ A VC+ P Sbjct: 253 PSRNLPGLPLRQIP--GMTPSLLNLPSGCAFRTRCERATAVCENTPP 297 >gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 534 Score = 184 bits (466), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 114/272 (41%), Positives = 159/272 (58%), Gaps = 19/272 (6%) Query: 50 RAVDGVSFDIMKGETLGVVGESGCGKSTTARVLMQLIKQDS---GELVFDGQTVGSRA-M 105 + V+ VSF I GE +VGESG GK+ TA +++L QD+ G ++F+GQ + R+ Sbjct: 17 KVVNDVSFSIAAGEKFALVGESGSGKTVTALSILRL-NQDAAYAGRILFEGQDILQRSEA 75 Query: 106 PLRQFR-RQAQMVFQDSYSSLNPRMTIEDSIAFAPIVH-GLPAREAIARARSLLARVGL- 162 +R R + M+FQ+ ++LNP TI + IA ++H GL AR A RA LL + G+ Sbjct: 76 AMRAVRGKDVAMIFQEPMTALNPLFTIGNQIAEGLMLHEGLSARIAALRAIELLDKTGIP 135 Query: 163 QPERFAGRYPHELSGGQRQRVNIARALALEPRLVILDEAVSALDKSVEAQVLNLLLDLKQ 222 +P+R A YPH+LSGGQRQR IA ALA +P+L+I DE +ALD +++ Q++ LL L++ Sbjct: 136 EPQRRALSYPHQLSGGQRQRAMIAMALACKPKLLIADEPTTALDVTIQVQIVELLNQLQR 195 Query: 223 EFGLTYLFISHDLNVVRFISDRVLVMYLGQVVEVGPAEQVFDAPRHPYTRALLRSMPSMD 282 E + L I+HDLN+VR +DRV VM G +VEV ++F APR YTR LL S P Sbjct: 196 EENMAVLMITHDLNLVRHFADRVGVMEKGCLVEVAATRELFTAPRETYTRKLLASQPQQL 255 Query: 283 PTRRTEQAPLAGDPPNPINPPPGCRFHTRCQF 314 E A P H RC F Sbjct: 256 VNTLNESA-----------VPLLSAEHVRCTF 276 Score = 170 bits (431), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 118/262 (45%), Positives = 161/262 (61%), Gaps = 16/262 (6%) Query: 21 PLLGVRQLLKHFPLKQQGLPWLRGPANAVRAVDGVSFDIMKGETLGVVGESGCGKSTTAR 80 PLL + F +KQ W + AVD VS + GETLG+VGESG GK+T Sbjct: 265 PLLSAEHVRCTFDIKQ---GWFK--TTPFVAVDDVSVQVRPGETLGIVGESGSGKTTLGL 319 Query: 81 VLMQLIK-QDSGELVFDGQTVGS-RAMPLRQFRRQAQMVFQDSYSSLNPRMTIEDSIAFA 138 L++L + SG + FDG+ + + ++ LR R + Q+VFQD ++SL+PR TIE + Sbjct: 320 ALLRLSSARVSGTIAFDGKPLNAMQSDALRPLRARMQIVFQDPFASLSPRRTIEQIVGEG 379 Query: 139 PIVH-----GLPAREAIARARSLLARVGLQPERFAGRYPHELSGGQRQRVNIARALALEP 193 +H R+A+A A L VGL P+ A RYPHE SGGQRQR+ IAR L L+P Sbjct: 380 LALHQPQLGAAGIRKAVADA---LLEVGLPPDIMA-RYPHEFSGGQRQRIAIARVLVLKP 435 Query: 194 RLVILDEAVSALDKSVEAQVLNLLLDLKQEFGLTYLFISHDLNVVRFISDRVLVMYLGQV 253 LV+LDE S+LD SV+ QVL LLL+L++++ L Y+FISHDL V+R ++ RV+VM G+V Sbjct: 436 DLVLLDEPTSSLDVSVQQQVLQLLLELQKKYELAYIFISHDLAVIRAMAHRVMVMKDGKV 495 Query: 254 VEVGPAEQVFDAPRHPYTRALL 275 VE G + V P YT+ LL Sbjct: 496 VESGMTQAVLSQPTEAYTQRLL 517 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 135 bits (340), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 84/233 (36%), Positives = 131/233 (56%), Gaps = 8/233 (3%) Query: 52 VDGVSFDIMKGETLGVVGESGCGKSTTARVLMQLIKQDSGELVFDGQTVGSRAMPLRQFR 111 VD +S I GE ++G SGCGK+T R++ + D+G+++ DG V +P Q Sbjct: 19 VDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILLDG--VDLTGVPPEQ-- 74 Query: 112 RQAQMVFQDSYSSLNPRMTIEDSIAFAPIVHGLPAREAIARARSLLARVGLQPERFAGRY 171 R + VFQ+ +L P MT+ +IAF + P E + L V L FA RY Sbjct: 75 RVVRTVFQNY--ALFPHMTVAGNIAFPLEMANTPKSEIKQKVDEALEDVRLTG--FAARY 130 Query: 172 PHELSGGQRQRVNIARALALEPRLVILDEAVSALDKSVEAQVLNLLLDLKQEFGLTYLFI 231 PHELSGGQRQRV+IARAL P+L++LDE +SALD + Q+ L++L++E G+T++++ Sbjct: 131 PHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQKEVGITFVYV 190 Query: 232 SHDLNVVRFISDRVLVMYLGQVVEVGPAEQVFDAPRHPYTRALLRSMPSMDPT 284 +HD +S R+ VM G + ++ +++ PR + + + D T Sbjct: 191 THDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVADFIGTCNLFDGT 243 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 129 bits (324), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 128/227 (56%), Gaps = 8/227 (3%) Query: 51 AVDGVSFDIMKGETLGVVGESGCGKSTTARVLMQLIKQDSGELVFDGQTVGSRAMPLRQF 110 A++ VS + GE ++G SGCGK+T R++ L + D G+++ DG+ +R + Sbjct: 17 ALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLDGEDASARHVR---- 72 Query: 111 RRQAQMVFQDSYSSLNPRMTIEDSIAFAPIVHGLPAR--EAIARARSLLARVGLQPERFA 168 RQ VFQ + +L MT+ ++IAF V R E++ + + +Q + A Sbjct: 73 ERQVGFVFQ--HYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKVTKLLELVQLDWLA 130 Query: 169 GRYPHELSGGQRQRVNIARALALEPRLVILDEAVSALDKSVEAQVLNLLLDLKQEFGLTY 228 RYP +LSGGQRQR+ +ARALA+EPR+++LDE ALD V ++ L L E +T Sbjct: 131 DRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTS 190 Query: 229 LFISHDLNVVRFISDRVLVMYLGQVVEVGPAEQVFDAPRHPYTRALL 275 +F++HD ++D++++M G V ++G + V++ P P+ L Sbjct: 191 IFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVYGFL 237 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.138 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 659,710 Number of extensions: 26067 Number of successful extensions: 230 Number of sequences better than 1.0e-08: 45 Number of HSP's gapped: 166 Number of HSP's successfully gapped: 48 Length of query: 363 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 280 Effective length of database: 726,862 Effective search space: 203521360 Effective search space used: 203521360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)