BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4596.p (333 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096444|ref|YP_001101519.1| oligopeptide ABC transporter AT... 244 3e-66 gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter AT... 236 1e-63 gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter AT... 170 1e-43 gi|134093752|ref|YP_001098827.1| phosphate import ATP-binding pr... 117 6e-28 gi|134094341|ref|YP_001099416.1| phosphate ABC transporter ATP-b... 115 5e-27 >gi|134096444|ref|YP_001101519.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 321 Score = 244 bits (624), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 130/312 (41%), Positives = 191/312 (61%), Gaps = 3/312 (0%) Query: 12 LRDLRVTFQAPGKTIRAVSGVDLDVAAGEVVALIGESGSGKSVTLRSIMRLHPEQRTRIE 71 +++L++ F A ++AV V VA G+++ L+GESGSGKS+T SIM L + Sbjct: 1 MQNLQMHFTAREGVVKAVEDVSFSVAPGQIMGLVGESGSGKSMTAYSIMGLIDAPGKIVA 60 Query: 72 GRLQVDGRDVLQMTGRELSALRGHDVAMIFQEPLLALDPVYTVGEQIIETIRRHKKVSAA 131 G++ + +D+ ++ + +RG+ +AMIFQ+P++ L+PV + Q++E + H+ V A Sbjct: 61 GKILLKDQDLRALSPEAMRRIRGNRIAMIFQDPMMTLNPVLRIDTQMMEAVLAHQDVGKA 120 Query: 132 QARAQALALFEKVRIPSPERRLDAYAHEMSGGMRQRAMIALALSCSPKVLLADEPTTALD 191 ARA A +V I SP+ RL AY H+ SGGMRQR IA+AL P +++ DEPTTALD Sbjct: 121 TARAMARDALVRVGIASPDERLLAYPHQFSGGMRQRVAIAIALLNKPDLIICDEPTTALD 180 Query: 192 ATVQIQILLLLRELQRELGLSIIFVTHDIGAAVEVADRIAVMYAGRIVEQGPAAQLLSQP 251 T+Q QIL +++L RE G ++I++THD+ +AD + VMYAG+IVE G ++L QP Sbjct: 181 VTIQGQILYEMQKLCRESGTALIWITHDLSVIAGLADAVCVMYAGKIVESGSVQEVLEQP 240 Query: 252 RHPYTMSLLQSRSHGALQKGQRLPTIAGAPPDLARLPAGCAFAERCAHAQAACQSQQPPE 311 +HPYT L+ S L G L I G P L LP+GCAF RC A A C++ P Sbjct: 241 QHPYTHGLIASSPSRNL-PGLPLRQIPGMTPSLLNLPSGCAFRTRCERATAVCENT--PP 297 Query: 312 QRLDAQHTVRCL 323 +D T+RC Sbjct: 298 LSIDGARTLRCF 309 >gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 534 Score = 236 bits (602), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 120/255 (47%), Positives = 175/255 (68%), Gaps = 6/255 (2%) Query: 9 MVSLRDLRVTFQAPGKTIRAVSGVDLDVAAGEVVALIGESGSGKSVTLRSIMRLHPEQRT 68 ++ +++L+V+F T + V+ V +AAGE AL+GESGSGK+VT SI+RL+ Q Sbjct: 3 LLEIQNLQVSFD----TSKVVNDVSFSIAAGEKFALVGESGSGKTVTALSILRLN--QDA 56 Query: 69 RIEGRLQVDGRDVLQMTGRELSALRGHDVAMIFQEPLLALDPVYTVGEQIIETIRRHKKV 128 GR+ +G+D+LQ + + A+RG DVAMIFQEP+ AL+P++T+G QI E + H+ + Sbjct: 57 AYAGRILFEGQDILQRSEAAMRAVRGKDVAMIFQEPMTALNPLFTIGNQIAEGLMLHEGL 116 Query: 129 SAAQARAQALALFEKVRIPSPERRLDAYAHEMSGGMRQRAMIALALSCSPKVLLADEPTT 188 SA A +A+ L +K IP P+RR +Y H++SGG RQRAMIA+AL+C PK+L+ADEPTT Sbjct: 117 SARIAALRAIELLDKTGIPEPQRRALSYPHQLSGGQRQRAMIAMALACKPKLLIADEPTT 176 Query: 189 ALDATVQIQILLLLRELQRELGLSIIFVTHDIGAAVEVADRIAVMYAGRIVEQGPAAQLL 248 ALD T+Q+QI+ LL +LQRE ++++ +THD+ ADR+ VM G +VE +L Sbjct: 177 ALDVTIQVQIVELLNQLQREENMAVLMITHDLNLVRHFADRVGVMEKGCLVEVAATRELF 236 Query: 249 SQPRHPYTMSLLQSR 263 + PR YT LL S+ Sbjct: 237 TAPRETYTRKLLASQ 251 Score = 121 bits (303), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 98/266 (36%), Positives = 146/266 (54%), Gaps = 14/266 (5%) Query: 9 MVSLRDLRVTF---QAPGKT--IRAVSGVDLDVAAGEVVALIGESGSGKSVTLRSIMRLH 63 ++S +R TF Q KT AV V + V GE + ++GESGSGK+ +++RL Sbjct: 266 LLSAEHVRCTFDIKQGWFKTTPFVAVDDVSVQVRPGETLGIVGESGSGKTTLGLALLRL- 324 Query: 64 PEQRTRIEGRLQVDGRDVLQMTGRELSALRGHDVAMIFQEPLLALDPVYTVGEQIIETIR 123 R+ G + DG+ + M L LR + ++FQ+P +L P T+ + + E + Sbjct: 325 --SSARVSGTIAFDGKPLNAMQSDALRPLRAR-MQIVFQDPFASLSPRRTIEQIVGEGLA 381 Query: 124 RHK-KVSAAQAR-AQALALFEKVRIPSPERRLDAYAHEMSGGMRQRAMIALALSCSPKVL 181 H+ ++ AA R A A AL E + P + Y HE SGG RQR IA L P ++ Sbjct: 382 LHQPQLGAAGIRKAVADALLE---VGLPPDIMARYPHEFSGGQRQRIAIARVLVLKPDLV 438 Query: 182 LADEPTTALDATVQIQILLLLRELQRELGLSIIFVTHDIGAAVEVADRIAVMYAGRIVEQ 241 L DEPT++LD +VQ Q+L LL ELQ++ L+ IF++HD+ +A R+ VM G++VE Sbjct: 439 LLDEPTSSLDVSVQQQVLQLLLELQKKYELAYIFISHDLAVIRAMAHRVMVMKDGKVVES 498 Query: 242 GPAAQLLSQPRHPYTMSLLQSRSHGA 267 G +LSQP YT LL + + A Sbjct: 499 GMTQAVLSQPTEAYTQRLLAASVYAA 524 >gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 336 Score = 170 bits (430), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 105/301 (34%), Positives = 160/301 (53%), Gaps = 12/301 (3%) Query: 24 KTIRAVSGVDLDVAAGEVVALIGESGSGKSVTLRSIMRLHP-EQRTRIEGRLQVDGRDVL 82 + + AV V L + AGEVV L+GESG GKS R + LH +R+ + ++ Sbjct: 39 EVVHAVDQVTLTIHAGEVVGLVGESGCGKSTLGRMAVGLHTLSSGSRLWKGVNLEVSSAA 98 Query: 83 QMTGRELSALRGHDVAMIFQEPLLALDPVYTVGEQIIETIRRHKKVSAAQARAQALALFE 142 + ++L + MIFQ+P +L+P + + I E H V A++ L + Sbjct: 99 ERRQQQLG------MQMIFQDPYASLNPRMRIQDVIGEAPVAHGMVPASEQTEYVARLLQ 152 Query: 143 KVRI-PSPERRLDAYAHEMSGGMRQRAMIALALSCSPKVLLADEPTTALDATVQIQILLL 201 V + P+ RR + H+ SGG R R IA AL+ P++L+ DE ALD ++Q Q+L L Sbjct: 153 TVGLDPALARR---FPHQFSGGQRARIGIARALAVKPELLVCDEAVAALDVSIQAQVLNL 209 Query: 202 LRELQRELGLSIIFVTHDIGAAVEVADRIAVMYAGRIVEQGPAAQLLSQPRHPYTMSLLQ 261 +L+ EL L+ +F++HD+G V+DR+ +MY GRIVE P A+L ++P HPYT++LL Sbjct: 210 FIKLRDELNLTYLFISHDLGVVRHVSDRVLIMYLGRIVESSPTAELFARPNHPYTVALLA 269 Query: 262 SRSHGALQKGQRLPTIAGAPPDLARLPAGCAFAERCAHAQAACQSQQPPEQRLDAQHTVR 321 S ++K + G P P+GC F RC HA C +QP + + H Sbjct: 270 SAPRLEVKKID-FYAVKGEIPSPLHPPSGCHFHPRCPHAMPRCSVEQPLLKEIAPAHFSA 328 Query: 322 C 322 C Sbjct: 329 C 329 >gi|134093752|ref|YP_001098827.1| phosphate import ATP-binding protein [Herminiimonas arsenicoxydans] Length = 281 Score = 117 bits (294), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 83/262 (31%), Positives = 143/262 (54%), Gaps = 17/262 (6%) Query: 6 KQAMVSLRDLRVTFQAPGKTIRAVSGVDLDVAAGEVVALIGESGSGKSVTLRSIMRLHP- 64 ++ ++DL + + GKT +A+ ++L+V G+V+A IG SG GKS LR R++ Sbjct: 31 NDVVLQVKDLNLFY---GKT-QALFDINLNVPRGQVLAFIGPSGCGKSTLLRCFNRMNDL 86 Query: 65 EQRTRIEGRLQVDGRDVLQMTGRELSALRGHDVAMIFQEPLLALDPVY---TVGEQIIET 121 R+EG + VDGR+V + + ++ LR V M+FQ+P +Y G +++ Sbjct: 87 VDSCRVEGEVIVDGRNVYERS-VNVAELRRR-VGMVFQKPNPFPKTIYENVAYGLRLLGV 144 Query: 122 IRRHKKVSAAQARAQALALFEKVRIPSPERRLDAYAHEMSGGMRQRAMIALALSCSPKVL 181 R + + + AL+++V+ RL + +SGG +QR +IA A++ P+VL Sbjct: 145 KNRAQLDEVVERSLRQAALWDEVK-----DRLHSSGLSLSGGQQQRLVIARAIALEPEVL 199 Query: 182 LADEPTTALDATVQIQILLLLRELQRELGLSIIFVTHDIGAAVEVADRIAVMYAGRIVEQ 241 L DEP +ALD +I LL +L+++ +I+ VTH++ A V+D M+ G++VE Sbjct: 200 LLDEPCSALDPIATAKIEDLLDDLKQK--YTIVIVTHNMQQAARVSDFTGFMFMGKLVEF 257 Query: 242 GPAAQLLSQPRHPYTMSLLQSR 263 Q+ +QP + TM + R Sbjct: 258 SVTDQMFTQPTNKQTMDYITGR 279 >gi|134094341|ref|YP_001099416.1| phosphate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 252 Score = 115 bits (287), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 126/245 (51%), Gaps = 17/245 (6%) Query: 25 TIRAVSGVDLDVAAGEVVALIGESGSGKSVTLRSIMR---LHPEQRTRIEGRLQVDGRDV 81 T + + ++LD+ +V A IG SG GKS LR+ R L+P QR EG++ G+++ Sbjct: 17 TFQGLKNINLDIHDKKVTAFIGPSGCGKSTLLRTFNRMYDLYPGQRA--EGKIMYHGKNI 74 Query: 82 LQMTGRELSALRGHDVAMIFQEPLLALDPVY---TVGEQIIETIRRHKKVSAAQARAQAL 138 L+ G++++ LR V M+FQ+P VY G ++ E + + + + Sbjct: 75 LE-PGQDVNMLRAK-VGMVFQKPTPFPMSVYDNIAFGVRLYENLPKGEMDERVEWALNKA 132 Query: 139 ALFEKVRIPSPERRLDAYAHEMSGGMRQRAMIALALSCSPKVLLADEPTTALDATVQIQI 198 AL+ +V+ +L+ +SGG +QR IA ++ P VLL DEPT+ALD +I Sbjct: 133 ALWTEVK-----DKLNKSGLSLSGGQQQRLCIARGVAVKPDVLLLDEPTSALDPISTAKI 187 Query: 199 LLLLRELQRELGLSIIFVTHDIGAAVEVADRIAVMYAGRIVEQGPAAQLLSQPRHPYTMS 258 L+ EL+ + ++I VTH++ A +D A MY G +VE G Q+ P T Sbjct: 188 EELISELKGDYTIAI--VTHNMQQAARCSDYTAYMYLGELVEFGETDQIFMNPNKKDTQD 245 Query: 259 LLQSR 263 + R Sbjct: 246 YITGR 250 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.134 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 524,004 Number of extensions: 18309 Number of successful extensions: 244 Number of sequences better than 1.0e-08: 40 Number of HSP's gapped: 183 Number of HSP's successfully gapped: 42 Length of query: 333 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 251 Effective length of database: 730,157 Effective search space: 183269407 Effective search space used: 183269407 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)