BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4593.p (298 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096459|ref|YP_001101534.1| chloramphenicol resistance prot... 321 3e-89 gi|134095669|ref|YP_001100744.1| putative chloramphenicol-sensit... 71 5e-14 >gi|134096459|ref|YP_001101534.1| chloramphenicol resistance protein [Herminiimonas arsenicoxydans] Length = 294 Score = 321 bits (822), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 161/285 (56%), Positives = 214/285 (75%), Gaps = 1/285 (0%) Query: 3 YAVCASILWGLFPLYFKLLKEVPSFDIVVQRLFWSCVFLLAVLAWRRQWRWIVELAKQPL 62 YA+CA ++WG+FP+YFK L+E+P ++++ R+ W+ FL VL+ R+QW W+ + KQP Sbjct: 7 YALCAYVIWGMFPIYFKSLQEIPPMEVLMYRMVWALAFLAIVLSVRKQWAWLGPVLKQPK 66 Query: 63 VVGGCLLSALLLSGNWTLYVWAVNAGRIVDTSLGYFMSPLMSVFMGYLILKEKMRPLQWL 122 V+ G SALLLS NW LY+WAVN R+VD SLGYFM+PL++V +G +ILKE++R LQW+ Sbjct: 67 VLAGFTASALLLSSNWFLYIWAVNQDRVVDASLGYFMTPLVNVLLGSVILKERLRILQWV 126 Query: 123 AVFLALGAVLWLTIANGSLPWISLLIALTFAFYGLLRKTAHLGALEGLSLETLLMLPLVL 182 AV +A VLWLT NG PWISL+I +TF YGLLRKTA LG LEGLSLET+L+ PL + Sbjct: 127 AVGIAALGVLWLTWQNGHPPWISLMIGITFGMYGLLRKTASLGTLEGLSLETMLLFPLAV 186 Query: 183 VILGTDSLRDSNAFTHASTTARILLILSGPITAVPLLLFAHGARRIPLSMLGLIQYISPT 242 + L + + ++ F ASTT + L+I SGPITA+PLL+FA AR +PLS +GL+QYI+P+ Sbjct: 187 ISLLFMTSQGAHGFVDASTTTKWLMIASGPITAIPLLMFAAAARLVPLSTMGLMQYITPS 246 Query: 243 IQLLAGVLVYDEPFVGARAIGFCVIWAALAVYSAEGLW-RYLRSR 286 +QLLAG+ +Y EPF GAR IGF IW ALA YS +GLW Y RS+ Sbjct: 247 LQLLAGIWLYHEPFGGARLIGFAAIWIALAFYSIDGLWSSYGRSK 291 >gi|134095669|ref|YP_001100744.1| putative chloramphenicol-sensitive protein [Herminiimonas arsenicoxydans] Length = 294 Score = 71.2 bits (173), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 93/184 (50%), Gaps = 6/184 (3%) Query: 1 MPYAVCASILWGLFPLYFKLLKEVPSFDIVVQRLFWSCVFLLAVLAW---RRQ--WRWIV 55 + ++V +S L+ + Y LL + +I R + FL + W R+Q + Sbjct: 5 IAFSVLSSTLFAVLYFYSTLLTPLDGEEIFGWRTLLTFPFL-TIFIWACGRQQLIHTLLQ 63 Query: 56 ELAKQPLVVGGCLLSALLLSGNWTLYVWAVNAGRIVDTSLGYFMSPLMSVFMGYLILKEK 115 + +QPL++ G L SA LL L++WA GR + SLGYF+ PL + G ++ +++ Sbjct: 64 RIRRQPLLLVGALASAALLGIQLWLFMWAPLHGRALHVSLGYFLLPLTMLLTGRIVYQDR 123 Query: 116 MRPLQWLAVFLALGAVLWLTIANGSLPWISLLIALTFAFYGLLRKTAHLGALEGLSLETL 175 + Q LA F A+G V GS W +L++A + Y +LR+ L GL L+ Sbjct: 124 LSRPQKLAAFFAMGGVANELFQVGSFSWETLVVAFGYPLYFILRRRMGANNLGGLWLDMA 183 Query: 176 LMLP 179 L+LP Sbjct: 184 LLLP 187 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.329 0.142 0.454 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 524,308 Number of extensions: 19114 Number of successful extensions: 101 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 100 Number of HSP's successfully gapped: 2 Length of query: 298 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 217 Effective length of database: 733,452 Effective search space: 159159084 Effective search space used: 159159084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 128 (53.9 bits)