BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4592.p (555 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096461|ref|YP_001101536.1| putative ABC transporter ATP-bi... 1012 0.0 gi|134095629|ref|YP_001100704.1| ABC transporter ATP-binding pro... 341 6e-95 gi|134094319|ref|YP_001099394.1| ABC transporter ATP-binding pro... 237 1e-63 gi|134094544|ref|YP_001099619.1| ABC transporter ATP-binding pro... 218 7e-58 gi|134096065|ref|YP_001101140.1| ABC transporter ATP-binding pro... 82 8e-17 >gi|134096461|ref|YP_001101536.1| putative ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 555 Score = 1012 bits (2617), Expect = 0.0, Method: Compositional matrix adjust. Identities = 490/554 (88%), Positives = 525/554 (94%) Query: 1 MAQYVFTMNRVGKIVPPKRQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIE 60 MA YV+TMNRVGKIVPPKRQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGID +I Sbjct: 1 MANYVYTMNRVGKIVPPKRQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDTDII 60 Query: 61 GEAIPMPNLNIGYLPQEPQLDPDKTVRQEVESALGEVFEAQAKLDAVYAAYAEEDADFDA 120 GEA P PNLNIGYLPQEPQLDP++TVRQ VE LGEVFEA+A L+AVYAAYAE DADFDA Sbjct: 61 GEARPAPNLNIGYLPQEPQLDPEQTVRQAVEGGLGEVFEAKALLEAVYAAYAEPDADFDA 120 Query: 121 LATEQARLEAIIAAADGNSLNQQLEMAADALRLPPWDAKIGVLSGGEKRRVALCKLLLSK 180 LA EQ RLEAII+ + G++ QQLEMAADALRLPPWDAKIGVLSGGEKRRVALC+LLLSK Sbjct: 121 LAAEQGRLEAIISTSAGDNPEQQLEMAADALRLPPWDAKIGVLSGGEKRRVALCRLLLSK 180 Query: 181 PDMLLLDEPTNHLDAESVDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPW 240 PDMLLLDEPTNHLDAESVDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRG GIPW Sbjct: 181 PDMLLLDEPTNHLDAESVDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGSGIPW 240 Query: 241 KGNYSSWLEQKEARLKQEEASESARQKTIAKELEWVRQNPKGRQAKSKARLARFNELSEY 300 KGNYSSWLEQK RLKQEEA+ES+RQKTIAKELEWVRQNPKGRQAKSKARLARFNELSE+ Sbjct: 241 KGNYSSWLEQKGDRLKQEEATESSRQKTIAKELEWVRQNPKGRQAKSKARLARFNELSEH 300 Query: 301 EYQKRNETQEIFIPVAERLGNEVIEFKNVSKGYGDRLLIDDLNFKIPAGAIVGIIGPNGA 360 EYQKRNETQEIFIPVAERLGNEVIEFKNVSK +GDRLLID+LNF+IPAGAIVGIIGPNGA Sbjct: 301 EYQKRNETQEIFIPVAERLGNEVIEFKNVSKAFGDRLLIDNLNFRIPAGAIVGIIGPNGA 360 Query: 361 GKSTLFRMLAGRETPDSGEVVLGPTVKVSLVDQSREDLGNKKTVFEDVSGGADILTVGRF 420 GKSTLF+M+ G+E PDSGEVV+G T +VS+VDQSR+ L + KTVFEDV+GGADILTVGRF Sbjct: 361 GKSTLFKMITGKEQPDSGEVVIGTTARVSIVDQSRDSLNDGKTVFEDVTGGADILTVGRF 420 Query: 421 EMPSRAYLGRFNFKGGDQQKIVGNLSGGERGRLHLAKTLLQGGNVLLLDEPSNDLDVETL 480 EMPSRAYLGRFNFKGGDQQK+VGNLSGGERGRLHLAKTLL GGNVLLLDEPSNDLDVETL Sbjct: 421 EMPSRAYLGRFNFKGGDQQKVVGNLSGGERGRLHLAKTLLMGGNVLLLDEPSNDLDVETL 480 Query: 481 RALEDALLEFAGTVLVISHDRWFLDRIATHIIAFEGDSQVTFFDGNYQEYEADKKKRLGE 540 RALEDALLEFAG+V+VISHDRWFLDRIATHI+AFEG+SQV+FFDGNYQEYEADK+KRLGE Sbjct: 481 RALEDALLEFAGSVMVISHDRWFLDRIATHILAFEGNSQVSFFDGNYQEYEADKRKRLGE 540 Query: 541 EAAKPKRIRYKPVT 554 E AKPKRIRYKP++ Sbjct: 541 EGAKPKRIRYKPLS 554 >gi|134095629|ref|YP_001100704.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 633 Score = 341 bits (874), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 194/513 (37%), Positives = 304/513 (59%), Gaps = 5/513 (0%) Query: 21 ILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIEGEAIPMPNLNIGYLPQEPQL 80 +L S ++G++G NG+GKS+LLKI+AG K +G + + I Y+ QEP Sbjct: 18 LLDKAEFSLEATERVGLIGRNGTGKSSLLKIIAGTSKLDDGLFVMQQGIKIAYVEQEPHF 77 Query: 81 DPDKTVRQEVESALGEVFEAQAKLDAVYAAYAEEDADFDALATEQARLEAIIAAADGNSL 140 P+ +V V S +G++ + DA+ + +D D AL ++ + AAD +L Sbjct: 78 SPETSVYDAVASGMGDMQVLLTEYDALTGQFGGDDDD--ALMERMHDIQVKLDAADAWNL 135 Query: 141 NQQLEMAADALRLPPWDAKIGVLSGGEKRRVALCKLLLSKPDMLLLDEPTNHLDAESVDW 200 N ++E D L L D+ +G LSGG ++RVAL + L+S PD+LLLDEPTNHLD S+ W Sbjct: 136 NHKVEATLDRLNLVK-DSLMGTLSGGMQKRVALARALVSAPDVLLLDEPTNHLDFTSILW 194 Query: 201 LEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPWKGNYSSWLEQKEARLKQEEA 260 LE L+ + G+V+ ITHDR FLDN A I+ELDRG + + GN+S++ +K +L+ EE Sbjct: 195 LEGLLRDYKGSVLFITHDRSFLDNVATRIIELDRGRLLSFPGNFSAYQVRKAEQLEIEEV 254 Query: 261 SESARQKTIAKELEWVRQNPKGRQAKSKARLARFNELSEYEYQKRNETQEIFIPVA--ER 318 + K +A+E W+R+ + R+ + + R+ R L +R++ ++ + V+ +R Sbjct: 255 ENAKFDKFLAQEEVWIRKGVQARRTRDEGRVRRLEALRLSRSARRDQQGQVKLDVSSGDR 314 Query: 319 LGNEVIEFKNVSKGYGDRLLIDDLNFKIPAGAIVGIIGPNGAGKSTLFRMLAGRETPDSG 378 G V E +N++K YGD++++ D + I G VG+IG NGAGK+TL +M+ G E PDSG Sbjct: 315 SGKIVAEMENINKVYGDKVIVKDFSATILRGDKVGLIGLNGAGKTTLLKMILGEEEPDSG 374 Query: 379 EVVLGPTVKVSLVDQSREDLGNKKTVFEDVSGGADILTVGRFEMPSRAYLGRFNFKGGDQ 438 V G ++++ DQ R L + ++ + ++ G+D + + YL F F Sbjct: 375 TVKQGTKLQIAYFDQMRAQLNEEMSLADTIAPGSDWVEINGQRKHVMTYLNDFLFAPERA 434 Query: 439 QKIVGNLSGGERGRLHLAKTLLQGGNVLLLDEPSNDLDVETLRALEDALLEFAGTVLVIS 498 + V +LSGGER RL LA+ + NVL+LDEP+NDLD++TL LE+ L ++ GTV ++S Sbjct: 435 RSPVKSLSGGERNRLLLARLFAKPANVLVLDEPTNDLDIDTLELLEELLEDYEGTVFLVS 494 Query: 499 HDRWFLDRIATHIIAFEGDSQVTFFDGNYQEYE 531 HDR FLD + T +I EG+ + G Y ++E Sbjct: 495 HDRTFLDNVVTQVIVAEGNGLWREYIGGYSDWE 527 >gi|134094319|ref|YP_001099394.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 533 Score = 237 bits (605), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 167/524 (31%), Positives = 269/524 (51%), Gaps = 23/524 (4%) Query: 19 RQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIEGEAIPMPNLNIGYLPQEP 78 + + ++IS+ F G + G++G NG GKST +KI+ G G + PN +G L Q+ Sbjct: 14 KPLFENISVKFGDGNRYGLIGANGCGKSTFMKILGGDLDPSAGTVMLDPNERLGKLRQDQ 73 Query: 79 QLDPDKTVRQEVESALGEVFEAQAKLDAVYAAYAEEDADFDALATEQARLEAIIAAADGN 138 + V V E++ A ++ DA+YA D D+ + A LEA A DG Sbjct: 74 FAFEEMRVLDVVMMGHTEMWAAMSERDAIYANPEATDDDY----MKAADLEAKFAEYDGY 129 Query: 139 SLNQ---QLEMAADALRLPPWDAKIGVLSGGEKRRVALCKLLLSKPDMLLLDEPTNHLDA 195 + +L + A + + + +S G K RV L + L S PD+LLLDEPTN+LD Sbjct: 130 TAESRAGELLLGA-GVAIDLHQGPMSNVSPGWKLRVLLAQALFSNPDILLLDEPTNNLDI 188 Query: 196 ESVDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPWKGNYSSWLEQKEARL 255 ++ WLE L T++ I+HDR+FL+ + ++D G + GNY ++ Sbjct: 189 NTIRWLEDVLNERNSTMIIISHDRHFLNQVCTHVADMDYGTLKIYPGNYDDYMFASTQAR 248 Query: 256 KQEEASESARQKTIAKELEWVRQ----NPKGRQAKSKARLARFNELSEYEYQKRNETQEI 311 Q+ A+ + + +A+ E+VR+ K RQA S+A+ ++ + + R + Sbjct: 249 NQQLANNAKAKDKVAELQEFVRRFAANKSKARQATSRAKQIEKIKVDDIKPSSR-AYPFV 307 Query: 312 FIPVAERLGNEVIEFKNVSKGYGDRLLIDDLNFKIPAGAIVGIIGPNGAGKSTLFRMLAG 371 ++L +E + +SK Y DR L + + + AG + IIG NGAGK+TL R + G Sbjct: 308 RFDGEKKLHRLAVEAETISKAY-DRQLFKNFSIMVEAGERIAIIGANGAGKTTLLRCIGG 366 Query: 372 RE----TPDSGEVVLGPTVKVSLVDQS-REDLGNKKTVFEDVSGGADILTVGRFEMPSRA 426 E D G V V + Q ED + K + + + G + R+ Sbjct: 367 EEITGLAADQGRVKWAENANVGYMPQDPTEDFASDKNLTDWM---GQWTQEGDDDQAVRS 423 Query: 427 YLGRFNFKGGDQQKIVGNLSGGERGRLHLAKTLLQGGNVLLLDEPSNDLDVETLRALEDA 486 LGR F G D +K V LSGGE+GR+ K +L NVLL+DEP+N +D+E++ +L A Sbjct: 424 ILGRLLFGGDDVKKSVRVLSGGEKGRMTYGKLMLGRHNVLLMDEPTNHMDMESIESLNIA 483 Query: 487 LLEFAGTVLVISHDRWFLDRIATHIIAFEGDSQVTFFDGNYQEY 530 L ++AGT++ +SHDR F+ +AT ++ + D ++ F G Y++Y Sbjct: 484 LEKYAGTLIFVSHDREFVSSLATRVLELK-DGEIIDFQGTYEDY 526 Score = 113 bits (282), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 120/239 (50%), Gaps = 45/239 (18%) Query: 19 RQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIEGEAIPM------PNLNIG 72 RQ+ K+ S+ G +I ++G NG+GK+TLL+ + G +EI G A N N+G Sbjct: 331 RQLFKNFSIMVEAGERIAIIGANGAGKTTLLRCIGG--EEITGLAADQGRVKWAENANVG 388 Query: 73 YLPQEPQLDPDKTVRQEVESALGEVFEAQAKLDAVYAAYAEEDADFDALATEQARLEAII 132 Y+PQ+P D F + L + +E D A+ Sbjct: 389 YMPQDPTED----------------FASDKNLTDWMGQWTQEGDDDQAV----------- 421 Query: 133 AAADGNSLNQQLEMAADALRLPPWDAKIGVLSGGEKRRVALCKLLLSKPDMLLLDEPTNH 192 S+ +L D ++ + VLSGGEK R+ KL+L + ++LL+DEPTNH Sbjct: 422 -----RSILGRLLFGGDDVK-----KSVRVLSGGEKGRMTYGKLMLGRHNVLLMDEPTNH 471 Query: 193 LDAESVDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPWKGNYSSWLEQK 251 +D ES++ L L+++ GT++ ++HDR F+ + A +LEL G I ++G Y +L + Sbjct: 472 MDMESIESLNIALEKYAGTLIFVSHDREFVSSLATRVLELKDGEIIDFQGTYEDYLSSQ 530 >gi|134094544|ref|YP_001099619.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 656 Score = 218 bits (554), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 166/539 (30%), Positives = 274/539 (50%), Gaps = 53/539 (9%) Query: 21 ILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIEGE--AIPMPN-LNIGYLPQE 77 +L + ++ PG KIG++G NG+GKS+L ++ G E+ + I P+ + Y+ QE Sbjct: 7 LLDKVDVTLNPGDKIGLIGANGAGKSSLFGLLRG---ELHADLGTIDFPSKWRVAYVAQE 63 Query: 78 -PQLDPDKTVRQEVESAL-GEVFEAQAKLDAVYAAYAEEDADFDALATEQARLEAIIAAA 135 P L+ R ++ A+ G+V + + + + + AD L + L + +A A Sbjct: 64 TPPLE-----RSAIDYAIDGDVTLRRLEEELAFLESEPDTADNGTLIGD---LYSALADA 115 Query: 136 DGNSLNQQLE--MAADALRLPPWDAKIGVLSGGEKRRVALCKLLLSKPDMLLLDEPTNHL 193 D ++ + E + + + + SGG + R+ L + L+ D+LLLDEPTNHL Sbjct: 116 DAYTVRSRGEQLLLGLGFTMAQMEQPVASFSGGWRMRLNLAQALMCPSDLLLLDEPTNHL 175 Query: 194 DAESVDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPWKGNYSSWLEQKEA 253 D +++ WLE +L+R+PGT++ I+HDR FLD I+ +D + GNYS + Q+ A Sbjct: 176 DLDAIIWLEDWLKRYPGTLLVISHDRDFLDGVVNVIVHIDERKLKRYSGNYSGFERQRAA 235 Query: 254 R--LKQEEASESARQKTIAKEL--EWVRQNPKGRQAKSKAR-LARFNEL------SEYEY 302 + L Q + RQ+ + + Q K RQA+S+ + L++ EL +E+ + Sbjct: 236 QMILAQSALEKQTRQRAHLESFINRFKAQASKARQAQSRMKALSKMEELAPLRAAAEFSF 295 Query: 303 QKRNETQEIFIPVAERLGNEVIEFKNVSKGY---------GDRLLIDDLNFKIPAGAIVG 353 + R N ++ +NV GY ++ ++ +NF + G +G Sbjct: 296 EFREPANA---------PNPLLVMENVDAGYRIENEDYSITEKKIVSGINFSLQIGQRIG 346 Query: 354 IIGPNGAGKSTLFRMLAGRETPDSGEVVLGPTVKVSLVDQSR-EDLGNKKTVFEDVSGGA 412 ++G NGAGKSTL + +A P SG G + + Q + E L ++++ ++ A Sbjct: 347 LLGVNGAGKSTLIKTIAAELQPLSGVSEFGKGLAIGYFAQHQVEMLRHEESPLWHLAHIA 406 Query: 413 DILTVGRFEMPSRAYLGRFNFKGGDQQKIVGNLSGGERGRLHLAKTLLQGGNVLLLDEPS 472 + E R +LG FNF G + SGGE+ RL LA + Q N+LLLDEP+ Sbjct: 407 PNVR----EQELRNFLGSFNFNGAMVTSKIAPFSGGEKARLALALIVWQRPNLLLLDEPT 462 Query: 473 NDLDVETLRALEDALLEFAGTVLVISHDRWFLDRIATHIIAFEGDSQVTFFDGNYQEYE 531 N LD+ET AL AL +F GT++V+SHDR L R T D ++ FDG+ +Y+ Sbjct: 463 NHLDLETREALTMALAQFEGTLVVVSHDRHLL-RATTDEFIIVADGKLQPFDGDLDDYK 520 >gi|134096065|ref|YP_001101140.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 227 Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 105/211 (49%), Gaps = 19/211 (9%) Query: 323 VIEFKNVSKGYGDRLL-IDDLNFKIPAGAIVGIIGPNGAGKSTLFRMLAGRETPDSGEVV 381 +IEF+ VSK Y + + D+ + G +V + GP+GAGKSTL +M+A E P +G V+ Sbjct: 1 MIEFRQVSKKYAQNVTALSDITLSVDKGELVFLAGPSGAGKSTLLKMIAAIERPSAGTVI 60 Query: 382 LGPT----VKVSLVDQSREDLG---NKKTVFEDVSGGADIL----TVGRFEMPSRAYLGR 430 + +K S + R +LG ++ + D S A+++ G + Sbjct: 61 VSDHDIGRIKNSGLPYLRRNLGLIFQQQRLLSDRSVLANVMLPLIVCGAARADAERRARA 120 Query: 431 FNFKGGDQQKIVG---NLSGGERGRLHLAKTLLQGGNVLLLDEPSNDLDVETLRALEDAL 487 K G K LSGGE+ R+ +A+ ++ ++L DEP+ +LD E+ + DAL Sbjct: 121 ALDKVGLLDKAASAPQTLSGGEQQRVSIARAIVNRPQIILADEPTANLDRESANKVLDAL 180 Query: 488 LEFAG---TVLVISHDRWFLDRIATHIIAFE 515 F T L+ +HD FLD AT +I + Sbjct: 181 KAFHAVGVTCLISTHDEQFLD-TATRVIYLD 210 Score = 68.9 bits (167), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 110/227 (48%), Gaps = 32/227 (14%) Query: 22 LKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIEGEAIPMPNLNIGYLPQE--PQ 79 L DI+LS G + + G +G+GKSTLLK++A I++ G I + + +IG + P Sbjct: 18 LSDITLSVDKGELVFLAGPSGAGKSTLLKMIAAIERPSAGTVI-VSDHDIGRIKNSGLPY 76 Query: 80 LDPDKTVRQEVESALGEVFEAQAKLDAVYAAYAEEDADFDALATEQARLEAIIAAADGNS 139 L + LG +F+ Q L +D LA L I+ A Sbjct: 77 LRRN----------LGLIFQQQRLL-----------SDRSVLA--NVMLPLIVCGAARAD 113 Query: 140 LNQQLEMAADALRLPPWDAKI-GVLSGGEKRRVALCKLLLSKPDMLLLDEPTNHLDAESV 198 ++ A D + L A LSGGE++RV++ + ++++P ++L DEPT +LD ES Sbjct: 114 AERRARAALDKVGLLDKAASAPQTLSGGEQQRVSIARAIVNRPQIILADEPTANLDRESA 173 Query: 199 DWLEQFLQRFPG---TVVAITHDRYFLDNAAEWILELDRGHGI-PWK 241 + + L+ F T + THD FLD A ++ LD G I W+ Sbjct: 174 NKVLDALKAFHAVGVTCLISTHDEQFLDTATR-VIYLDHGKIIESWR 219 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 980,216 Number of extensions: 39131 Number of successful extensions: 374 Number of sequences better than 1.0e-08: 35 Number of HSP's gapped: 325 Number of HSP's successfully gapped: 45 Length of query: 555 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 469 Effective length of database: 716,977 Effective search space: 336262213 Effective search space used: 336262213 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)