BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4589.p
         (546 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093504|ref|YP_001098579.1| long-chain-fatty-acid--CoA liga...   122   3e-29
gi|134094157|ref|YP_001099232.1| acetyl-CoA synthetase [Herminii...    73   4e-14

>gi|134093504|ref|YP_001098579.1| long-chain-fatty-acid--CoA ligase
           [Herminiimonas arsenicoxydans]
          Length = 560

 Score =  122 bits (307), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 149/534 (27%), Positives = 231/534 (43%), Gaps = 78/534 (14%)

Query: 53  TRRLASALQQLGVGKNDTVSAMLPNTPAMVEAHFGVPMAGAVLNALNIRLDAESIVFMLR 112
           +++L + LQ  G+ K   V+ M+PN      A   V  AG V+  +N       +   L 
Sbjct: 58  SQKLGAWLQGTGLQKGARVALMMPNVLQYPVALAAVLRAGYVVVNVNPLYKPRELQHQLV 117

Query: 113 HGEAKVLLIDSEFAALAQQL--RTQLPGLKIVEVFDELG-----------------PPAV 153
              A+ ++I   FA   +++   TQ+  + +  + D LG                  PA 
Sbjct: 118 DSGAEAIIILENFATTLEKIIVSTQIKHVVVATMGDMLGGLKGLLVNFVVRHVKKMVPAF 177

Query: 154 AGERFGHLEYEALLATGDEHFEWKMPADEWDAIA-LNYTSGTTGDPKGVVYHHRGAALNA 212
           +  +   + ++ +LA    H   + P      IA L YT GTTG  KG +  HR    N 
Sbjct: 178 SLPQ--AVSFKDVLAQA-AHMHLQRPLLGPQDIAFLQYTGGTTGTAKGAMLTHR----NI 230

Query: 213 VSNILE---WDLP---KHPV-----YLWTLPMFHCNGWCFPWTVAARAGV-NVCLRKFE- 259
           V+NIL+   W  P   K P      ++  LP++H         +  R GV N+ +     
Sbjct: 231 VANILQNEAWIWPVLRKEPPDKTLNFVCALPLYHIFALTACCMLGTRLGVMNILIPNPRD 290

Query: 260 -PKLVFDLIAEHGITHYCAAPIVHAALANAPEGWRAGIRGPVKAMVAGAPPPAAVLAKME 318
            P LV +L+ ++ I    A   ++  L N P+                        AK++
Sbjct: 291 IPSLVKELM-KYKINLLPAVNTLYNGLLNNPD-----------------------FAKVD 326

Query: 319 AMQFELTHVYGL------TEVYGPAAVCAEQDAWSALSVDQRAVAKSRQGVRYHLQSGVT 372
             + +L +  G+       + +     C+  + +        A +   +   +    G+ 
Sbjct: 327 FSELKLCNGGGMAVQQVVNDRWRVVTGCSIIEGYGLSETSPVATSNPVETTEFSGTIGLP 386

Query: 373 VLSPDTMEPVAADGEEI----GEIMFRGNICMKGYLKNDRATHEAF-AGGWFHTGDLGVM 427
           V S + M   + D E      GEI  RG   M GY  N   T +A  A G+F TGD+GVM
Sbjct: 387 VPSTEVMILDSNDNEVALGLSGEIAIRGPQVMAGYWNNPAETAQAMTADGFFKTGDIGVM 446

Query: 428 NADGYIKIKDRSKDIIISGGENISSVEVEDVLYRHPAVLAAAVVAQPDEKWGETPCAFVE 487
           +A GY +I DR KD+I+  G N+   E+E+V+  HP VL  A +  PDE  GE    FV 
Sbjct: 447 DARGYTRIVDRKKDMILVSGFNVYPSEIENVVAGHPGVLECACIGVPDEHTGEAVKLFVV 506

Query: 488 LKEGAETGAVELTEFCRSHLAGFKVPKAIYF-GPLPKTSTGKIQKFELRKRMKS 540
            ++ A T A  L  FC+    G+K PK I F   LPK++ GKI + ELR  +K+
Sbjct: 507 RRDPALT-AEALMAFCKEQFTGYKKPKMIEFRTELPKSNVGKILRRELRDEIKT 559


>gi|134094157|ref|YP_001099232.1| acetyl-CoA synthetase
           [Herminiimonas arsenicoxydans]
          Length = 660

 Score = 72.8 bits (177), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 70/139 (50%), Gaps = 9/139 (6%)

Query: 411 HEAFAGGWFHTGDLGVMNAD-GYIKIKDRSKDIIISGGENISSVEVEDVLYRHPAVLAAA 469
           HE   G  +  GD  + N + GY  I  R  D++   G  + + E+E  L  +P V  AA
Sbjct: 501 HE-LGGRTYLAGDGAIRNEETGYFTITGRIDDVLNISGHRMGTAEIESALVANPMVAEAA 559

Query: 470 VVAQPDEKWGETPCAFVELK----EGAETGAV--ELTEFCRSHLAGFKVPKAIYFGP-LP 522
           VV +PDE  GE+ CAFV LK    EG E   +  EL ++    +     PK I FG  LP
Sbjct: 560 VVGKPDETTGESICAFVVLKRVRPEGDEAKQIAKELRDWVAKEIGPIAKPKEIRFGDNLP 619

Query: 523 KTSTGKIQKFELRKRMKSD 541
           KT +GKI +  LR   K +
Sbjct: 620 KTRSGKIMRRLLRVLAKDE 638


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,030,175
Number of extensions: 42105
Number of successful extensions: 133
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 2
Length of query: 546
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 460
Effective length of database: 716,977
Effective search space: 329809420
Effective search space used: 329809420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)