BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4584.p
         (199 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095716|ref|YP_001100791.1| hypothetical protein HEAR2548 [...   123   8e-30
gi|134093706|ref|YP_001098781.1| hypothetical protein HEAR0435 [...   116   9e-28
gi|134093716|ref|YP_001098791.1| hypothetical protein HEAR0446 [...    93   1e-20

>gi|134095716|ref|YP_001100791.1| hypothetical protein HEAR2548
           [Herminiimonas arsenicoxydans]
          Length = 198

 Score =  123 bits (308), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 107/191 (56%), Gaps = 2/191 (1%)

Query: 1   MPVSEQNKIYQEIIDALIAMHRLTDGYTPNHEDQTAELAVMIGQHLNLPRGRIDVLHMAA 60
           +P++ +       + AL A     D YT  H D+   LA  +G    +P   + VL +AA
Sbjct: 7   IPMASKYSGLTAAVGALHAALDERDEYTRFHSDRVVTLATKLGAACGIPLVDMPVLRLAA 66

Query: 61  QVHDIGKARIPLDLLTKPGRITADEYGVLKTHVQFGYEILNKISFPF--NLAEIVWCHHE 118
           Q HDIGK  +P ++L KPG +T +E+ ++++H + G  I      P    +A I+  HHE
Sbjct: 67  QFHDIGKIGVPDNVLKKPGPLTQEEWVLMRSHTERGERIFRATGLPIADRIAPIIRHHHE 126

Query: 119 YLDGSGYPRGIGAEALPLEARILTVADIVESMSADRPYRKSLGMRVALEEIQRQSGSRLD 178
            ++G+GYP G+  E +PL +RIL VAD  ++M+  RPYR++L  R +L+ I+   G + D
Sbjct: 127 VINGTGYPDGLQGEEIPLMSRILAVADAYDAMTTTRPYREALTHRQSLDFIELDKGVKFD 186

Query: 179 PMVVEACVQVV 189
             +V    ++V
Sbjct: 187 TAIVGVFFKMV 197


>gi|134093706|ref|YP_001098781.1| hypothetical protein HEAR0435
           [Herminiimonas arsenicoxydans]
          Length = 457

 Score =  116 bits (290), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 90/158 (56%)

Query: 27  YTPNHEDQTAELAVMIGQHLNLPRGRIDVLHMAAQVHDIGKARIPLDLLTKPGRITADEY 86
           YT  H  + A    MI + + L   R   L   A +HD+GK  +   +L KP ++  DE+
Sbjct: 290 YTSGHSARVALYTDMIAEAMGLSPERRRWLKRGALLHDVGKLGVSNSVLDKPDKLDRDEW 349

Query: 87  GVLKTHVQFGYEILNKISFPFNLAEIVWCHHEYLDGSGYPRGIGAEALPLEARILTVADI 146
             +K H  +   IL++I     LA I   HHE LDG GYPRG+ A+A+ +E RI+T ADI
Sbjct: 350 DAVKLHATYTENILSRIGAFAELARIAGAHHERLDGGGYPRGLKADAISIETRIITTADI 409

Query: 147 VESMSADRPYRKSLGMRVALEEIQRQSGSRLDPMVVEA 184
            ++++A+RPYR ++ +   LE +    G+ LDP+  EA
Sbjct: 410 FDAITAERPYRGAIPIPRTLEMMATTQGTALDPLCFEA 447


>gi|134093716|ref|YP_001098791.1| hypothetical protein HEAR0446
           [Herminiimonas arsenicoxydans]
          Length = 399

 Score = 92.8 bits (229), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 6/179 (3%)

Query: 15  DALIAMHRLT--DGYTPNHEDQTAELAVMIGQHLNLPRGRIDVLHMAAQVHDIGKARIPL 72
           DALI++ RL   D YT  H      L + + + + L  G+I    +A  +HD+GK  +  
Sbjct: 141 DALISLARLKNKDDYTYMHSVAVCALMIALARKMKLDDGQIRDAGLAGLLHDVGKMMVSQ 200

Query: 73  DLLTKPGRITADEYGVLKTHVQFGYEILNKISFPFNLAEIVWC--HHEYLDGSGYPRGIG 130
            +L KPG++T +E+ V+K H   G++IL+ +S   + A +  C  HHE  DG+GYP  + 
Sbjct: 201 SILDKPGQLTDEEFVVVKEHPVEGHKILS-VSPDVSEAALDVCLHHHERFDGTGYPHRLA 259

Query: 131 AEALPLEARILTVADIVESMSADRPYRKSLGMRVALEEIQRQSGSRLDPMVVEACVQVV 189
            E + L AR+  V D+ ++++++R Y+       +L  +    G   DP V +A V+ +
Sbjct: 260 GENISLFARMGAVCDVYDAITSNRAYKAGWEPSESLRRMAEWKG-HFDPAVFQAFVKCI 317


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 381,827
Number of extensions: 15165
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 3
Length of query: 199
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 122
Effective length of database: 746,632
Effective search space: 91089104
Effective search space used: 91089104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)