BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4583.p
         (386 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093448|ref|YP_001098523.1| major facilitator superfamily p...   404   e-114

>gi|134093448|ref|YP_001098523.1| major facilitator superfamily
           permease [Herminiimonas arsenicoxydans]
          Length = 384

 Score =  404 bits (1039), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/386 (55%), Positives = 276/386 (71%), Gaps = 2/386 (0%)

Query: 1   MTTKPSISRSPSPLRLIWRKFAIPWFFLLLGVVFATWAARIPAIRDHLQLDAATLALVLL 60
           M+ +  +S S    RL  +  A P+ F+LLGV++A+WAARIPAIRD LQL  A L +VLL
Sbjct: 1   MSIQILLSASSRFPRL--QSAATPFLFILLGVIYASWAARIPAIRDVLQLSPAQLGMVLL 58

Query: 61  CGGIGAVGSFPLAAWITGHYGARHSSLYAGLALLVSLPLLGLAPNLWTLMLVCTVYGAAS 120
            GG GAV SFPLAAW+ G +G R ++ YAGL L+V LP L LAPN+  L++   V GAAS
Sbjct: 59  GGGFGAVASFPLAAWLVGRFGGRRAAWYAGLGLIVVLPALALAPNMLWLVIAAIVLGAAS 118

Query: 121 SCFDVAINALGAQAERDAGRPIMSMLHGWFCVGTFSGALTASAVAGMGIAPIWHFLLVAA 180
            CFDVAINA+G   E+ AGR  MS+LH WF  G  SGAL  SA+AG G+ P+ HF + A 
Sbjct: 119 GCFDVAINAIGTAHEKLAGRSTMSLLHAWFSAGAVSGALFGSAMAGFGMTPVVHFSITAL 178

Query: 181 LFLYPLYAGYGALPDDRPAHDPERKLFALPHGHLVVLGVIAFCGAIVEGSVADWSGIYMK 240
           + L PLY  Y ALP ++      ++ FA+ HG LV LG+I FCGA+ EGS+ADWSG++MK
Sbjct: 179 VLLPPLYIAYQALPPEQIEKPTSKQYFAIAHGPLVALGIIGFCGAVAEGSIADWSGVFMK 238

Query: 241 DHIGASDGTTPLAYAAFAGMMLIMRMVGDGLKARYDARRVVWIGTLVASAGMALAVAAPG 300
           D +GA DG  PLAYA FA +ML+ R+V D LK  Y ARRVV +G  +A+ G+ +AVAA  
Sbjct: 239 DRMGAHDGVAPLAYAGFAALMLLARLVCDRLKDGYGARRVVAVGASLAACGIFIAVAAFN 298

Query: 301 MVWAILGFAIAGTGVAAVFPFVFSAAGRHGSSALAAVATLGYSGSLIGPPLFGFLAHGWG 360
           +   I GFA+AG G A+VFPFVFS+AGRHG++ALAAVAT  YSG LIGPP+ GFLA GWG
Sbjct: 299 IPLTIFGFALAGAGFASVFPFVFSSAGRHGATALAAVATFSYSGGLIGPPVIGFLAQGWG 358

Query: 361 LQAALALLGVLCLAMSGSSRRAQWLQ 386
           +Q AL L+GV+ +A++ S+ RA+WL+
Sbjct: 359 MQVALGLIGVMAIAIALSASRARWLE 384


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.327    0.140    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 651,467
Number of extensions: 25719
Number of successful extensions: 154
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 303
Effective length of database: 726,862
Effective search space: 220239186
Effective search space used: 220239186
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)