BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4578.p (2960 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093732|ref|YP_001098807.1| putative surface adhesin [Hermi... 805 0.0 >gi|134093732|ref|YP_001098807.1| putative surface adhesin [Herminiimonas arsenicoxydans] Length = 2104 Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust. Identities = 619/1672 (37%), Positives = 893/1672 (53%), Gaps = 209/1672 (12%) Query: 932 DLRIDVVRDLEQRGQTAASANID---IRTAGRFSHYGTTAAGASLSISAKGVENHAGAAL 988 +LRI+ + G A + D + T ++ G AG L++SA+ ++N + Sbjct: 361 NLRIETSGTINNVGAQAVISAQDHAAVVTTADLTNAGKIDAGNVLTLSAQNIDNTVTGEI 420 Query: 989 LGKEVLLTATEASTLLNRGLIDGVTTRLQAGTLDNLGPGRLYGDRLAIRADVLHNAPEIV 1048 ++AT+ L NRGLIDG T LQAGTLDN+G GR+YGD L I ADVL+N E V Sbjct: 421 AAVTSRISATDK--LSNRGLIDGSETLLQAGTLDNIGTGRIYGDHLGIAADVLNNDTETV 478 Query: 1049 EGVLRAPVIAARERLDIGAGEIHNSEQALLYSVGD----IAIGGTLGQDYRAGGRARAVN 1104 + VIAARERLDIGAG ++N AL++S G I IGG+L G A +N Sbjct: 479 NSIRSDAVIAARERLDIGAGVLNNKNGALIFSAGTGANAINIGGSLDAQGHTTGTAGTIN 538 Query: 1105 NTSATINADGRLRIAADTINNHNAHFETSEENKPGRRIINYRLVGSSDFISADKARLISI 1164 N +A I + G + I+A +NN N F T N +A A I Sbjct: 539 NEAAIIESLGGIHISAQQLNNLNPDFSTKTNN----------------ITNAASAHYIGF 582 Query: 1165 GNSQIIAPENWRAMGDEDNFRLLLPSAEYPFDRYGPPVDYNREVLRRDYSSGGIGVVPAY 1224 G+ + + E + +PS+ YPF YS G +P Y Sbjct: 583 GSVRYLESETGIS-----GLEYAVPSSAYPF--------------AAGYSRVGYSQIPEY 623 Query: 1225 LKPLPESSTETAILPALPELFV--YLPSDRIWDVFGIARPTAEVPREPDKPAGCSDADNC 1282 L +++V Y +W +F + P E Sbjct: 624 DPDL--------------DMYVNTYPDGSNVWALFNV--PVGE----------------- 650 Query: 1283 VSGDYQQRRAAWKAVRDAQLPAYEKLNEAIRDFNISLRE---RLFDQ-WIIHDGTEQIRR 1338 ++ L ++ +N LR R+FD WI ++I Sbjct: 651 ----------------------HQTLASRLQGYNQDLRSRAYRVFDHIWITG---QKIVE 685 Query: 1339 TIVTRS-APGMITSGGGMDLVAGVVNNYASQFIAGGALVADRINGTTINNIGPLGRQTVT 1397 T+V + PG I +GGGM L G V N S+ +AGG L ++ ++ N G + V+ Sbjct: 686 TVVDNAGVPGQIVAGGGMTLTGGNVLNDNSKILAGGDL---HVSVGSLTNTETPGHREVS 742 Query: 1398 STGTAQRTFVKSHSFKADDRRYESAPYASQTIETQFQLEVTPTHGTGSTRDAISRAAITA 1457 GT +R FV+ ++ + S Y T +L+ + +G S +S Sbjct: 743 DIGTFRRDFVEYSPYRLRAGEFGSGSYVLVTESVTTKLDTSIANGKAS----VSGTGTQL 798 Query: 1458 PTQPLPATGRTNDLRAPAVDVSLPINALYQVNNSSPTAPLVQTDARFIGNRNWLSSDFLI 1517 T+ P + +L +N + + + D RF + WLSSD+++ Sbjct: 799 ATRIAPGS------------------SLLILNPDPDDSHIYKGDPRFNNQQQWLSSDYML 840 Query: 1518 QRIREQSGPAPQVQRFADGFYEQQLIQRQIQEATGQRYLKGFNSNEAQYLALMQAGLQQA 1577 Q + + P +R DGFYEQ++++ QI + TG+R+L G+ S E QY ALMQAG A Sbjct: 841 QVL--ATDPDAIQKRLGDGFYEQRIVREQIAQLTGRRFLDGYASEETQYQALMQAGAAYA 898 Query: 1578 QAQRYALGIALSEAQIAQLKTDIVWLVKQTVTLADGRTQEVLVPQVYLHPSNIQVSGQQT 1637 + G++L+ AQ+AQL +DIVWLV Q V L DG LVPQVY+ P ++ + Sbjct: 899 KEWELVPGVSLTAAQMAQLTSDIVWLVAQEVVLPDGAITTALVPQVYVMPRQGDLAANGS 958 Query: 1638 LIAGNDLALQTAQDILNRGGTIAARSGVSLRADNLRNLGGRIVGGNVDIAAASDIDNAGG 1697 L+AG ++ +Q + D+ N GTIA R+ + + A+N++NLGG I G V +AA D+ N GG Sbjct: 959 LLAGQNVNIQLSGDLTNS-GTIAGRNVMQITANNVQNLGG-ISGKAVSVAAQQDLTNFGG 1016 Query: 1698 SIDADQQLILRAGRDIALTS-TSVDTANATTVGRNINQVASVSG------KDVVIA-AGR 1749 + A+ L+ AGRD+ + S TS TA+A ++ QV V+G K +++A AG Sbjct: 1017 RMMAEDSLVATAGRDLTVQSTTSTGTASAGRSSSSLTQVNRVAGLYVTGEKGILVASAGN 1076 Query: 1750 DFTANAAVIAARGDVSILAARDVNFGAVTEYFRQEIRWANDRGGSNWVRTLTGPNLVDRG 1809 DF+ A V+++ GD+ + A ++N G V ++ ++ ANDR N++R Sbjct: 1077 DFSVLAGVLSSAGDIQVTAGNNINLGTVETGYKSDLT-ANDR---NYMR----------- 1121 Query: 1810 NGAYGTTEVGVNRAVVTGSQEVATQ-VSGSNIRIQAGQDVITQGTQIVADGALQAQAGRD 1868 +G+QEV +Q VSG + I G + + + G L AG D Sbjct: 1122 ---------------ASGTQEVGSQIVSGGSTNIMVGNNFNARAATVDVTGDLALSAGGD 1166 Query: 1869 IQIGTANASGSARDQVQRSSGGILSAKTVRTDDASSFSRQMGSTLSGNAVLVRAGQDVKV 1928 ++I A + D S G LS+ + + + S +GS++ G V + +G D + Sbjct: 1167 VRITEGRAIRQSDDARYAKSKGFLSSSSTESREQSLSDSAIGSSMGGKTVTIASGGDTLI 1226 Query: 1929 TGSDVVSTQGTAVVAGRDVNIASAIDSSTRRSFRQERASGVMGA-GLGVTVGSRVQSRDV 1987 GS+VV T VVAG D++I +A ++S SF + + SG+ + GL +T G + QS Sbjct: 1227 RGSNVVGDNDTIVVAGHDLSIEAATNTSQGSSFNETKKSGLFSSGGLSITYGKQEQSTGQ 1286 Query: 1988 DGHAQTAAASTVGSVEGNVTIVAGNRYTQVGSDVLAPKGDIDIAARSVEIRAAEQASRTE 2047 ++ STVGS+ G+V +VAG Y Q+GSDVLAP GDI IAA+ V+I AA Sbjct: 1287 QNTRTSSVGSTVGSIAGDVLLVAGQTYNQIGSDVLAPSGDISIAAKKVDIVAASNTYTNS 1346 Query: 2048 TEDKFKQSGLTVAVTSPVLSAIQTVGQMAEAASKTKDRRMQALAGATAGLSVSNAIDAVI 2107 TE FKQSGLT+A+TSPV+SAIQTV QMA+AASKT+D RMQ LAGATAGL+ + A+ Sbjct: 1347 TEQHFKQSGLTLAITSPVISAIQTVQQMADAASKTQDGRMQVLAGATAGLAAKDGYKAIQ 1406 Query: 2108 AGQGQTIDGKANQIVTGPADPVTGKAPTRDANAAEKVGGINLAFSLGASSSQSRSEQTSN 2167 AGQG TI+GK NQI TG G +R+A AA++ GGINL+ S+GASSS+S++ QT N Sbjct: 1407 AGQGTTINGKENQITTG--SDTEGNPTSREATAADQAGGINLSISIGASSSESKTTQTGN 1464 Query: 2168 TVRGSTVSAGGSVNISAQGGGADSNIVIQGSDIKAGVNATLKAANEVRLISAQETSEQHS 2227 GSTV AGG+V I A G G DS++ +QGSDI AG N + A +E++L++AQ T EQHS Sbjct: 1465 HAIGSTVVAGGNVTIVASGAGKDSDVTVQGSDISAGNNVVISAEDEIKLLAAQNTDEQHS 1524 Query: 2228 RNSGASGSVGVSIGTDGLLFTASASGSRGKGEGAEVTQVNTHVDAGNKPTIVSGTDTTIS 2287 N +SGS+G+SIGT G TASAS RG +G +V+ NTH++AGN+ + SG DTT+ Sbjct: 1525 TNKSSSGSIGISIGTSGFGVTASASTGRGNADGKDVSWTNTHINAGNQLAMQSGGDTTLK 1584 Query: 2288 GAVVRGKQVEMEVGTSGKGNLNIASQQDSSTFQSRQQSLGGSVSVGTGKMGGSVNYSQSN 2347 GAVV GKQV VG G+L I S QD+S + S+Q+++GGS+++G G M GS++YS+S+ Sbjct: 1585 GAVVEGKQVVAGVG----GDLRIESLQDTSEYGSKQKNMGGSITIGAG-MSGSISYSKSS 1639 Query: 2348 INSNYASVMEQSGIKAGDGGFQINVRGNTDLKGAVIASSDKAVAANKNSLTTQTLTQSDI 2407 NS+YASV EQSGI+AGD GFQ+ V GNTDL GA+IAS+++A +KN L T +LT SDI Sbjct: 1640 ANSDYASVSEQSGIRAGDDGFQLKVDGNTDLNGAIIASTERAARDDKNILVTASLTSSDI 1699 Query: 2408 QNIAQYDAQSVGIGVG---YNTGKDG---GLSATPPMVVGANGSASSTTRSAISGGVITI 2461 N A+ AQS GI + + GK G G+ T ++GS++ TTRSA+ GVI + Sbjct: 1700 ANHAEASAQSSGINLSSDMFTKGKYGIAKGIIGTSLNNGESSGSSAGTTRSAVESGVIVL 1759 Query: 2462 TDDKKQQELTGKTAEQAIASVNREV-----SSSKEGSNALKPIFNKEEIENKTAI---AG 2513 TDD Q LTGKT+ ++IAS+NR ++ K+ +A++ E+I K AI Sbjct: 1760 TDDTAQWALTGKTSNESIASLNRNTIHAHNAAQKQDIDAMRQAAEAEKII-KQAIFVETT 1818 Query: 2514 AFTRELGSFLNNRAKEADEARRKLD--DAIAEERGNPVEQRDETRLRRLTEQ 2563 FT E + + E + D I E G P+ LR L+EQ Sbjct: 1819 KFTDEAYRTIFIKQHPMFEIEKDADGNTLIDETTGKPI-------LRVLSEQ 1863 Score = 287 bits (735), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 199/520 (38%), Positives = 301/520 (57%), Gaps = 59/520 (11%) Query: 2 VSGAGRCSALRLSIALALAWHSVVHAQILIDRNAPPTQQASVLSSGNGVPVVNIQQPNAR 61 +S A + +S+++ LA+ AQI+ D NAP Q+ ++L + NG+ VNIQ P+A Sbjct: 53 ISFAAKLVVGVMSLSMPLAY-----AQIVADPNAPGNQRPTILQTANGLSQVNIQTPSAA 107 Query: 62 GLSVNRYRRFDVDARGVILNNAGSASKTGLAGYVAGNPRLAGGGARVIVNQINATDPSYL 121 G+S N Y +FDV + G ILNN+ + + T G+V NP L GG ARVI+N++N+++PS L Sbjct: 108 GVSRNTYSQFDVQSNGAILNNSRTNTATQTGGWVQANPWLVGGAARVILNEVNSSNPSQL 167 Query: 122 RGFIEVAGHQAQVIIANPAGITCAGCGFINAPRVTLTTGTPI---IHQGSLESYRVGGGV 178 RG++EVAG +A+VIIANPAGI G GFINA RVTLTTGT + +H GSLESYR+ G Sbjct: 168 RGYVEVAGQKAEVIIANPAGIQVNGGGFINADRVTLTTGTAVMNPLHGGSLESYRIPQGT 227 Query: 179 LSIEGDGMQAGSADYADLIARAVRINAGLWANRVKVSTGLNAV---SADHE-QVVPGVAP 234 +SI+G G+ +A Y D++AR+V++NAG+WANR+KV TG N V SAD+ V GV P Sbjct: 228 ISIDGLGLDTRTASYTDILARSVQVNAGIWANRLKVVTGANEVSTTSADYPGNVAQGVTP 287 Query: 235 LDAT---PLRAIDVAHLGGMYAGHIYLMATEQGVGAHNGGKL-VADTELIVTAAGRLENT 290 + AT P ++DVA +GGMYAGHIYL+ +E G+G N G + A L++ + G L N Sbjct: 288 IAATGPAPQFSLDVAAIGGMYAGHIYLVGSESGLGVRNQGAINAAGGNLVLLSNGFLTNE 347 Query: 291 GTLAAR------GHTRLEVAGALGNSGSIGGTTGLTVNAAALDNSGDLLTPAALEIGLKQ 344 G + A G+ R+E +G + N G+ +A D++ + T Sbjct: 348 GAIQAASSNGSGGNLRIETSGTINNVGA-------QAVISAQDHAAVVTTA--------- 391 Query: 345 GLINGGRIGSNALLTVQAATLENRQDLYSSRSSVQLKIGERLVNRGNIEARQTVTANATA 404 L N G+I + +LT+ A ++N + + ++ ++L NRG I+ +T+ T Sbjct: 392 DLTNAGKIDAGNVLTLSAQNIDNTVTGEIAAVTSRISATDKLSNRGLIDGSETLLQAGT- 450 Query: 405 LDN--QGRF------ISEDALAVITRT--HIRNTGTLGSQGAVDLRAASVDNQG---LIS 451 LDN GR I+ D L T T IR+ + ++ +D+ A ++N+ + S Sbjct: 451 LDNIGTGRIYGDHLGIAADVLNNDTETVNSIRSDAVIAARERLDIGAGVLNNKNGALIFS 510 Query: 452 AGK-AMTISLSGQLNNDKTLQASGDITIDAAAVDNKGSVV 490 AG A I++ G +L A G T A ++N+ +++ Sbjct: 511 AGTGANAINIGG------SLDAQGHTTGTAGTINNEAAII 544 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.312 0.129 0.352 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 5,252,709 Number of extensions: 224510 Number of successful extensions: 716 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 665 Number of HSP's successfully gapped: 4 Length of query: 2960 Length of database: 1,000,347 Length adjustment: 99 Effective length of query: 2861 Effective length of database: 674,142 Effective search space: 1928720262 Effective search space used: 1928720262 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 138 (57.8 bits)