BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4574.p (282 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095428|ref|YP_001100503.1| transposase [Herminiimonas arse... 144 5e-36 gi|134095379|ref|YP_001100454.1| transposase [Herminiimonas arse... 144 5e-36 gi|134095299|ref|YP_001100374.1| transposase [Herminiimonas arse... 144 5e-36 gi|134094371|ref|YP_001099446.1| transposase [Herminiimonas arse... 144 5e-36 gi|134093805|ref|YP_001098880.1| transposase [Herminiimonas arse... 144 5e-36 >gi|134095428|ref|YP_001100503.1| transposase [Herminiimonas arsenicoxydans] Length = 288 Score = 144 bits (363), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 87/260 (33%), Positives = 139/260 (53%), Gaps = 10/260 (3%) Query: 11 YAARQRNPQLCCARSKRDAVLRVEISRVWHANMRVYGADKVWRQLNREGVSIARCTVERL 70 YA R P C R + L + + + R YGA +VW L G VERL Sbjct: 30 YAWLTRTP---CKRRTENEQLGRAVHHSFIQSDRTYGARRVWHDLLASGYRCGLHRVERL 86 Query: 71 MRKQGLQGARRGKQLRTTRSD-PKAACPLDRVNRQFKADRPNQLWVSDFTYVSTWQGWLY 129 M+ Q L+ R + L R + P + ++RQF A PN+ WV+DFTY+ + +GWLY Sbjct: 87 MQAQALRARPRRRSLPIDRGERPVIGIAANVLDRQFDASAPNRKWVADFTYIWSAEGWLY 146 Query: 130 VAFVIDVFARRIVGWRVSNSMTTDFVLDALEQALYAR-QPEGNGGLIHHSDRGSQYVGIR 188 +A V+D+++RR++GW + M V DAL A++ R +PE ++HHSDRGSQY + Sbjct: 147 LAVVLDLYSRRVIGWSMKPEMNAQLVADALMMAVWRRGKPE---SVMHHSDRGSQYTSEQ 203 Query: 189 YSERLAEAGIAPSVGSRGDSYDNALAETINGLYKAELIHRRAPWKTRESVELATLEWVA- 247 + L E G+ S+ G+ +DN+ E+ K E + R+ ++TR+ + +++ Sbjct: 204 FQRLLLELGVTCSMSRAGNVWDNSAMESFFSSLKTERLSRKM-FRTRDDIRAEVFDYIER 262 Query: 248 WFNHHRLLESIGYIPPAEAE 267 ++N R ++GYI P + E Sbjct: 263 FYNPVRRHSTLGYISPIDFE 282 >gi|134095379|ref|YP_001100454.1| transposase [Herminiimonas arsenicoxydans] Length = 288 Score = 144 bits (363), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 87/260 (33%), Positives = 139/260 (53%), Gaps = 10/260 (3%) Query: 11 YAARQRNPQLCCARSKRDAVLRVEISRVWHANMRVYGADKVWRQLNREGVSIARCTVERL 70 YA R P C R + L + + + R YGA +VW L G VERL Sbjct: 30 YAWLTRTP---CKRRTENEQLGRAVHHSFIQSDRTYGARRVWHDLLASGYRCGLHRVERL 86 Query: 71 MRKQGLQGARRGKQLRTTRSD-PKAACPLDRVNRQFKADRPNQLWVSDFTYVSTWQGWLY 129 M+ Q L+ R + L R + P + ++RQF A PN+ WV+DFTY+ + +GWLY Sbjct: 87 MQAQALRARPRRRSLPIDRGERPVIGIAANVLDRQFDASAPNRKWVADFTYIWSAEGWLY 146 Query: 130 VAFVIDVFARRIVGWRVSNSMTTDFVLDALEQALYAR-QPEGNGGLIHHSDRGSQYVGIR 188 +A V+D+++RR++GW + M V DAL A++ R +PE ++HHSDRGSQY + Sbjct: 147 LAVVLDLYSRRVIGWSMKPEMNAQLVADALMMAVWRRGKPE---SVMHHSDRGSQYTSEQ 203 Query: 189 YSERLAEAGIAPSVGSRGDSYDNALAETINGLYKAELIHRRAPWKTRESVELATLEWVA- 247 + L E G+ S+ G+ +DN+ E+ K E + R+ ++TR+ + +++ Sbjct: 204 FQRLLLELGVTCSMSRAGNVWDNSAMESFFSSLKTERLSRKM-FRTRDDIRAEVFDYIER 262 Query: 248 WFNHHRLLESIGYIPPAEAE 267 ++N R ++GYI P + E Sbjct: 263 FYNPVRRHSTLGYISPIDFE 282 >gi|134095299|ref|YP_001100374.1| transposase [Herminiimonas arsenicoxydans] Length = 288 Score = 144 bits (363), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 87/260 (33%), Positives = 139/260 (53%), Gaps = 10/260 (3%) Query: 11 YAARQRNPQLCCARSKRDAVLRVEISRVWHANMRVYGADKVWRQLNREGVSIARCTVERL 70 YA R P C R + L + + + R YGA +VW L G VERL Sbjct: 30 YAWLTRTP---CKRRTENEQLGRAVHHSFIQSDRTYGARRVWHDLLASGYRCGLHRVERL 86 Query: 71 MRKQGLQGARRGKQLRTTRSD-PKAACPLDRVNRQFKADRPNQLWVSDFTYVSTWQGWLY 129 M+ Q L+ R + L R + P + ++RQF A PN+ WV+DFTY+ + +GWLY Sbjct: 87 MQAQALRARPRRRSLPIDRGERPVIGIAANVLDRQFDASAPNRKWVADFTYIWSAEGWLY 146 Query: 130 VAFVIDVFARRIVGWRVSNSMTTDFVLDALEQALYAR-QPEGNGGLIHHSDRGSQYVGIR 188 +A V+D+++RR++GW + M V DAL A++ R +PE ++HHSDRGSQY + Sbjct: 147 LAVVLDLYSRRVIGWSMKPEMNAQLVADALMMAVWRRGKPE---SVMHHSDRGSQYTSEQ 203 Query: 189 YSERLAEAGIAPSVGSRGDSYDNALAETINGLYKAELIHRRAPWKTRESVELATLEWVA- 247 + L E G+ S+ G+ +DN+ E+ K E + R+ ++TR+ + +++ Sbjct: 204 FQRLLLELGVTCSMSRAGNVWDNSAMESFFSSLKTERLSRKM-FRTRDDIRAEVFDYIER 262 Query: 248 WFNHHRLLESIGYIPPAEAE 267 ++N R ++GYI P + E Sbjct: 263 FYNPVRRHSTLGYISPIDFE 282 >gi|134094371|ref|YP_001099446.1| transposase [Herminiimonas arsenicoxydans] Length = 288 Score = 144 bits (363), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 87/260 (33%), Positives = 139/260 (53%), Gaps = 10/260 (3%) Query: 11 YAARQRNPQLCCARSKRDAVLRVEISRVWHANMRVYGADKVWRQLNREGVSIARCTVERL 70 YA R P C R + L + + + R YGA +VW L G VERL Sbjct: 30 YAWLTRTP---CKRRTENEQLGRAVHHSFIQSDRTYGARRVWHDLLASGYRCGLHRVERL 86 Query: 71 MRKQGLQGARRGKQLRTTRSD-PKAACPLDRVNRQFKADRPNQLWVSDFTYVSTWQGWLY 129 M+ Q L+ R + L R + P + ++RQF A PN+ WV+DFTY+ + +GWLY Sbjct: 87 MQAQALRARPRRRSLPIDRGERPVIGIAANVLDRQFDASAPNRKWVADFTYIWSAEGWLY 146 Query: 130 VAFVIDVFARRIVGWRVSNSMTTDFVLDALEQALYAR-QPEGNGGLIHHSDRGSQYVGIR 188 +A V+D+++RR++GW + M V DAL A++ R +PE ++HHSDRGSQY + Sbjct: 147 LAVVLDLYSRRVIGWSMKPEMNAQLVADALMMAVWRRGKPE---SVMHHSDRGSQYTSEQ 203 Query: 189 YSERLAEAGIAPSVGSRGDSYDNALAETINGLYKAELIHRRAPWKTRESVELATLEWVA- 247 + L E G+ S+ G+ +DN+ E+ K E + R+ ++TR+ + +++ Sbjct: 204 FQRLLLELGVTCSMSRAGNVWDNSAMESFFSSLKTERLSRKM-FRTRDDIRAEVFDYIER 262 Query: 248 WFNHHRLLESIGYIPPAEAE 267 ++N R ++GYI P + E Sbjct: 263 FYNPVRRHSTLGYISPIDFE 282 >gi|134093805|ref|YP_001098880.1| transposase [Herminiimonas arsenicoxydans] Length = 288 Score = 144 bits (363), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 87/260 (33%), Positives = 139/260 (53%), Gaps = 10/260 (3%) Query: 11 YAARQRNPQLCCARSKRDAVLRVEISRVWHANMRVYGADKVWRQLNREGVSIARCTVERL 70 YA R P C R + L + + + R YGA +VW L G VERL Sbjct: 30 YAWLTRTP---CKRRTENEQLGRAVHHSFIQSDRTYGARRVWHDLLASGYRCGLHRVERL 86 Query: 71 MRKQGLQGARRGKQLRTTRSD-PKAACPLDRVNRQFKADRPNQLWVSDFTYVSTWQGWLY 129 M+ Q L+ R + L R + P + ++RQF A PN+ WV+DFTY+ + +GWLY Sbjct: 87 MQAQALRARPRRRSLPIDRGERPVIGIAANVLDRQFDASAPNRKWVADFTYIWSAEGWLY 146 Query: 130 VAFVIDVFARRIVGWRVSNSMTTDFVLDALEQALYAR-QPEGNGGLIHHSDRGSQYVGIR 188 +A V+D+++RR++GW + M V DAL A++ R +PE ++HHSDRGSQY + Sbjct: 147 LAVVLDLYSRRVIGWSMKPEMNAQLVADALMMAVWRRGKPE---SVMHHSDRGSQYTSEQ 203 Query: 189 YSERLAEAGIAPSVGSRGDSYDNALAETINGLYKAELIHRRAPWKTRESVELATLEWVA- 247 + L E G+ S+ G+ +DN+ E+ K E + R+ ++TR+ + +++ Sbjct: 204 FQRLLLELGVTCSMSRAGNVWDNSAMESFFSSLKTERLSRKM-FRTRDDIRAEVFDYIER 262 Query: 248 WFNHHRLLESIGYIPPAEAE 267 ++N R ++GYI P + E Sbjct: 263 FYNPVRRHSTLGYISPIDFE 282 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.133 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 544,406 Number of extensions: 21846 Number of successful extensions: 72 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 54 Number of HSP's successfully gapped: 9 Length of query: 282 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 201 Effective length of database: 733,452 Effective search space: 147423852 Effective search space used: 147423852 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)