BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4572.p
         (302 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093393|ref|YP_001098468.1| putative hydroxymethylglutaryl-...   447   e-127

>gi|134093393|ref|YP_001098468.1| putative hydroxymethylglutaryl-CoA
           lyase [Herminiimonas arsenicoxydans]
          Length = 269

 Score =  447 bits (1150), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 214/267 (80%), Positives = 240/267 (89%)

Query: 34  VNRLSAAGFPNVEAASFVSPKWVPQMATSAEVMRGITRKPGVIYSALVPNMKGFDAALEA 93
           +NRLS AGF N+EAASFVSPKWVPQMATSAEVM GITR+PG +YSALVPNMKGF+AAL A
Sbjct: 1   MNRLSQAGFVNIEAASFVSPKWVPQMATSAEVMAGITRRPGTLYSALVPNMKGFEAALAA 60

Query: 94  GVDEVVIFGAASEAFSQKNINCSIAESIARFAEVAKAAKDHRKRLRAAVSCAFGCPYQGE 153
           GVDEVVIF AASEAFSQKNINCSIAES+ RF +VA+AAK+++ RLR A+SCAFGCPYQGE
Sbjct: 61  GVDEVVIFAAASEAFSQKNINCSIAESVERFRDVARAAKENKLRLRGALSCAFGCPYQGE 120

Query: 154 VPLDAVADVVRRFRELGCDEIDIADTIGVATPGKVRPVMETAIREFHIEGLSGHFHDTYG 213
           V  D+VA VV++ R+LGCDEIDIADTIGVATP  V+ VM+ A +EF IE LSGHFHDTYG
Sbjct: 121 VSADSVASVVQQLRDLGCDEIDIADTIGVATPRHVQAVMQRAAQEFPIEKLSGHFHDTYG 180

Query: 214 QALANIYASLQTGISIYHASVAGLGGCPYAKGATGNVATEDVLYMMHGLGIETGVDLDAV 273
           QALANIYASL+ GI+IYHASVAGLGGCPYAKGATGNVATEDVLYM+ GLGI TG+DLD V
Sbjct: 181 QALANIYASLEVGITIYHASVAGLGGCPYAKGATGNVATEDVLYMLRGLGIATGIDLDKV 240

Query: 274 VEAGQFISQQLGRKSVSRAGNAMVAKR 300
           V+AGQFIS QLGRK+VSRAGNA+ AKR
Sbjct: 241 VDAGQFISAQLGRKAVSRAGNALAAKR 267


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 538,503
Number of extensions: 21608
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 221
Effective length of database: 733,452
Effective search space: 162092892
Effective search space used: 162092892
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)