BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4569.p
         (671 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095926|ref|YP_001101001.1| acetyl CoA carboxylase, biotin ...   392   e-110
gi|134094395|ref|YP_001099470.1| carbamoyl phosphate synthase, l...    63   4e-11

>gi|134095926|ref|YP_001101001.1| acetyl CoA carboxylase, biotin
           carboxylase subunit [Herminiimonas arsenicoxydans]
          Length = 456

 Score =  392 bits (1006), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/445 (48%), Positives = 285/445 (64%), Gaps = 16/445 (3%)

Query: 1   MFTKILVANRGEIACRVAATARRMGIATVAVYSDADAHAKHVAACDESVHIGPAPAKESY 60
           MF KIL+ANRGEIA R+    R MGI TV V+S+AD  AK+V   DESV IGPAP+  SY
Sbjct: 1   MFEKILIANRGEIALRIQRACREMGIKTVVVHSEADRDAKYVKLADESVCIGPAPSTLSY 60

Query: 61  LCGDKIIAAALASGAQAIHPGYGFLSENAGFAQACAEAGLVFIGPPASAIDAMGSKSAAK 120
           L    II+AA  + A+AIHPGYGFLSENA FA+   ++G VFIGP + +I  MG K  AK
Sbjct: 61  LNMPAIISAAEVTDAEAIHPGYGFLSENADFAERVEQSGFVFIGPRSESIRMMGDKVTAK 120

Query: 121 ALMETAAVPLVPGYHGA-RQESDFLRNEADRIGYPVLLKASAGGGGKGMRVVERSEEFDA 179
             M  A VP VPG  GA   +   +   A ++GYPV++KA+ GGGG+GMRVV        
Sbjct: 121 QTMIKAGVPCVPGSDGALPDDPKEIIQTARKVGYPVIIKAAGGGGGRGMRVVHTEAALLN 180

Query: 180 ALASCKREAISSFGDDRVLVEKYLTRPRHIEIQVFADRHGHCVYLFERDCSVQRRHQKVL 239
           A+   K EA S+FG+  V +EKYL  PRH+EIQ+ AD H + ++L ERDCS+QRRHQKVL
Sbjct: 181 AVTMTKTEAGSAFGNPEVYMEKYLENPRHVEIQILADEHKNAIWLGERDCSMQRRHQKVL 240

Query: 240 EEAPAPGMSSQRRAAMGQAAVAAARAVGYVGAGTVEFIANQDGSFYFMEMNTRLQVEHPV 299
           EEAPAPG+  +    +G     A R +GY GAGT EF+  ++G FYF+EMNTR+QVEHPV
Sbjct: 241 EEAPAPGIPRKTIERIGDRCAEACRKMGYRGAGTFEFLY-ENGEFYFIEMNTRVQVEHPV 299

Query: 300 TEMITGLDLVEWQLRVAAGEALPLQQDQLRLQGHAIEARIYAENPEKGFLPAIGTLSHLR 359
           TEMITG+D+V+ Q+R+AAGE L  +Q  + L GHAIE RI AE+P K F P+ G      
Sbjct: 300 TEMITGIDIVQEQIRIAAGEKLRYRQRDIVLNGHAIECRINAEDPFK-FTPSPG------ 352

Query: 360 CAPAVEFTLATAGATQPAAVRIDSGVREGDAISPFYDPMIAKLIVWGTDRQAALRNLTRA 419
                   + +  A     +R+DS    G  + P YD M+ K+I +G  R+ A++ +  A
Sbjct: 353 -------KIVSWHAPGGPGIRVDSHAYAGYYVPPHYDSMVGKVISYGATREQAIKRMQIA 405

Query: 420 LAQYQVVGLATNIGFLQRLVAGQAF 444
           L++  V G++TNI   + L+    F
Sbjct: 406 LSEMVVEGISTNIPLHRELMVDARF 430


>gi|134094395|ref|YP_001099470.1| carbamoyl phosphate synthase,
           large subunit [Herminiimonas arsenicoxydans]
          Length = 1076

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 106/240 (44%), Gaps = 24/240 (10%)

Query: 99  GLVFIGPPASAIDAMGSKSAAK-ALMETAAVPLVPGYHGARQESDFLRNEADRIGYPVLL 157
           G   IG    AID    +S  K A+ +        G     +ES  ++ E   +G+P ++
Sbjct: 112 GCELIGASPEAIDKAEDRSKFKDAMTKIGLGSARSGVAHTLEESWAVQKE---LGFPSII 168

Query: 158 KASAGGGGKGMRVVERSEEFDAALASCKREAISSFGDDRVLVEKYLTRPRHIEIQVFADR 217
           + S   GG G  +   +EEF+A    CKR  + +     +L+E+ L   +  E++V  D+
Sbjct: 169 RPSFTMGGSGGGIAYNAEEFEAI---CKR-GLEASPTSELLIEESLIGWKEFEMEVVRDK 224

Query: 218 HGHCVYLFERDCSVQRRHQ------KVLEEAPAPGMSSQRRAAMGQAAVAAARAVGY-VG 270
             +C+ +    CS++            +  APA  ++ +    M  A++A  R +G   G
Sbjct: 225 ADNCIIV----CSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNASIAVLREIGVDTG 280

Query: 271 AGTVEFIAN-QDGSFYFMEMNTRLQVEHPVTEMITGLDLVEWQLRVAAGEALPLQQDQLR 329
              V+F  N +DG    +EMN R+     +    TG  + +   ++A G  L    D+LR
Sbjct: 281 GSNVQFAINPEDGRMIIIEMNPRVSRSSALASKATGFPIAKIAAKLAVGFTL----DELR 336


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,143,819
Number of extensions: 43322
Number of successful extensions: 178
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 2
Length of query: 671
Length of database: 1,000,347
Length adjustment: 88
Effective length of query: 583
Effective length of database: 710,387
Effective search space: 414155621
Effective search space used: 414155621
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)