BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4565.p (394 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095998|ref|YP_001101073.1| acyl-CoA dehydrogenase [Hermini... 96 4e-21 gi|134093872|ref|YP_001098947.1| putative acyl-CoA dehydrogenase... 94 8e-21 gi|134094276|ref|YP_001099351.1| putative acyl-CoA dehydrogenase... 83 3e-17 >gi|134095998|ref|YP_001101073.1| acyl-CoA dehydrogenase [Herminiimonas arsenicoxydans] Length = 596 Score = 95.5 bits (236), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 103/381 (27%), Positives = 180/381 (47%), Gaps = 52/381 (13%) Query: 55 GVLGMTVGEEYGGAGLGYLAHIIAMEEISRASAS----VGLSYGAHSNLCVNQIKRNGNE 110 G ++ EYGG GL + E ++ ++ + GLS+GA+ C+++ +G Sbjct: 92 GWPSLSCDPEYGGQGLPMVLQNSFFEMLNSSNQAWTMYPGLSHGAYE--CLHE---HGTA 146 Query: 111 EQKRKYLPKLISGDFIGALAMSEPNAGSDVVSMKLRADKQGD-RYVLNGSKMWITNGPDA 169 EQK YLPKL+SG++ G + ++E + G+D+ ++ +A+ Q D Y + GSK++I+ G Sbjct: 147 EQKALYLPKLVSGEWTGTMCLTEAHCGTDLGLLRSKAEPQADGSYKITGSKIFISAGEHD 206 Query: 170 DV-----LVVYAKTDLQAGARGMTAFLVEKGFKG-----------FSVAQKLDKLGMRGS 213 V LV+ D G G++ F+V K F A + +K+G+ G+ Sbjct: 207 MVQNILHLVLARLPDAPQGTHGISLFIVPKFLPNADGTLGARNPIFCGALE-EKMGIHGN 265 Query: 214 HTGELVFQDCEVPEENVLGGVGRGVNVLMSGLDFERSVLSGGPLGIMQACMDVVVPYVHQ 273 T ++ + + ++G +G+N + ++ R + LG+ + + Y Sbjct: 266 ATCQM---NIDGATGWMIGQPNKGLNAMFVMMNAARLGVGMQSLGLTEVAYQNALLYAKD 322 Query: 274 RQQFGQAIG--------EFQLMQGKLADMYSTMMAC----KAYVYAVGQACDRADNTDKV 321 R Q G + ++ + M T A +A+ V DR N Sbjct: 323 RLQMRSLTGVKAADKPADPIIVHPDVRRMLLTAKAYAEGGRAFSSYVALQIDRELNHPD- 381 Query: 322 RALRKDAAG--AILYSAEKAT-----WMA-GEAIQALGGNGYINEYPVGRLWRDAKLYEI 373 A+RKDAA A+L KA W+A EA+Q GG+GYI E+ + + RDA++ I Sbjct: 382 EAVRKDAADEVALLTPIIKAFLTDNGWIATSEAMQVYGGHGYIAEWGMEQYVRDARINMI 441 Query: 374 GAGTSEIRRM-LIGRELFADT 393 GT+ I+ + L+GR++ D Sbjct: 442 YEGTNTIQSLDLLGRKILLDN 462 >gi|134093872|ref|YP_001098947.1| putative acyl-CoA dehydrogenase [Herminiimonas arsenicoxydans] Length = 596 Score = 94.4 bits (233), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 112/432 (25%), Positives = 187/432 (43%), Gaps = 44/432 (10%) Query: 4 LPGLSFDHGDDIAALREAVAAFAQSEIAPRAAEIDRSDQFPMD-----------LWKKLG 52 LPG + + A+ E A F IAP DR D +K G Sbjct: 26 LPGCEDATPETVEAVLEENARFCSEVIAPLNQTGDRQPSAWKDGAVTTTPGFKEAFKAYG 85 Query: 53 ELGVLGMTVGEEYGGAGLGYLAHIIAMEEISRASASVGLSYGAHSNLCVNQIKRNGNEEQ 112 G G+ +GG GL + ME ++ A+ S L ++ + + G+E Q Sbjct: 86 AAGWQGVQHPVYFGGQGLPKMVATPCMEMLNAANLSFALC-PLLTDGAIEALMTAGSEAQ 144 Query: 113 KRKYLPKLISGDFIGALAMSEPNAGSDVVSMKLRADKQGD-RYVLNGSKMWITNG----P 167 K +LP I+G + G + ++EP AGSD+ ++ RA QGD Y ++G+K++IT G Sbjct: 145 KETFLPNFIAGKWTGTMNLTEPQAGSDLAMVRSRAVPQGDGTYKISGTKIFITYGEHDMA 204 Query: 168 DADVLVVYAKT-DLQAGARGMTAFLVEK---------GFKGFSVAQKLD-KLGMRGSHTG 216 + V +V A+T D G +G++ F+V K G + + ++ KLG+R S T Sbjct: 205 ENIVHLVLARTPDAPEGVKGISLFVVPKFLVNADGSLGARNDAYCVSIEHKLGIRASPTA 264 Query: 217 ELVFQDCEVPEENVLGGVGRGVNVLMSGLDFERSVLSGGPLGIMQACMDVVVPYVHQRQQ 276 L F D ++G RG+ + ++ R + + + + V Y R Q Sbjct: 265 VLQFGDHGGAIGTLVGEENRGLETMFIMMNAARFAVGIQGIAVAERAYQKAVSYAKDRVQ 324 Query: 277 F----GQAIGEFQLMQGKLADMYSTMM----ACKAYVYAVGQACDRADN--TDKVRALRK 326 G A + Q + M +M A +A Y A D A + +VR+ + Sbjct: 325 SKDLEGSATAVSIIHQPDVRRMLMSMRAQIEAARALAYVGAAAFDIAHHHADAEVRSSHQ 384 Query: 327 DAAGAIL-----YSAEKATWMAGEAIQALGGNGYINEYPVGRLWRDAKLYEIGAGTSEIR 381 ++ ++ E + +A +Q GG G+I E + +RDA++ I GT+ I+ Sbjct: 385 AFYEFLVPVIKGWATEMSIDVASTGLQIHGGMGFIEETGAAQYYRDARILTIYEGTTAIQ 444 Query: 382 -RMLIGRELFAD 392 L+GR+ D Sbjct: 445 ANDLVGRKTARD 456 >gi|134094276|ref|YP_001099351.1| putative acyl-CoA dehydrogenase (flavoprotein), putative aidB protein [Herminiimonas arsenicoxydans] Length = 551 Score = 82.8 bits (203), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 73/286 (25%), Positives = 127/286 (44%), Gaps = 27/286 (9%) Query: 111 EQKRKYLPKLISGDFIGALAMSEPNAGSDV-----VSMKLRADKQGDRYVLNGSKMWITN 165 E + LP + + M+E GSDV V+ + +G Y L G K W + Sbjct: 162 EHDPRDLPWAQKHSMLIGMGMTEKQGGSDVRSNTTVARAVHGSGRGADYALTGHK-WFFS 220 Query: 166 GPDADVLVVYAKTDLQAGARGMTAFLVEK----GFKGFSVAQKL-DKLGMRGSHTGELVF 220 P D +V A+T+ G++ F V + G + + Q+L DKLG R + + E+ F Sbjct: 221 APMCDAHLVLARTE-----NGLSCFFVPRWRPDGSRNAVLIQQLKDKLGNRSNSSSEVEF 275 Query: 221 QDCEVPEENVLGGVGRGVNVLMSGLDFERSVLSGGPLGIMQACMDVVVPYVHQRQQFGQA 280 QD ++G GRG+ ++ + R G G+M+ + + + R FG Sbjct: 276 QDAY---GVMVGEEGRGIPTIIEMANHTRLDCVIGSAGLMRNALVQAIHHARHRSAFGHP 332 Query: 281 IGEFQLMQGKLADMY-----STMMACKAYVYAVGQACDRADNTDKVRALRKD-AAGAILY 334 + E LM+ L+D+ +T++ + A D + RA R+ A + Sbjct: 333 LAEQPLMRNVLSDLALESEAATLLMLRLARAADASRDAPDDLLE--RAWRRILTPAAKFW 390 Query: 335 SAEKATWMAGEAIQALGGNGYINEYPVGRLWRDAKLYEIGAGTSEI 380 ++ +GE ++ GGNGYI P+ R++R+A + I G+ + Sbjct: 391 VCKRVLEFSGECMEVWGGNGYIENAPMARMFREAPVNSIWEGSGNV 436 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 715,337 Number of extensions: 28313 Number of successful extensions: 82 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 78 Number of HSP's successfully gapped: 3 Length of query: 394 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 310 Effective length of database: 723,567 Effective search space: 224305770 Effective search space used: 224305770 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)