BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4558.p
         (258 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093450|ref|YP_001098525.1| putative nuclease [Herminiimona...   414   e-117
gi|134095562|ref|YP_001100637.1| putative exodeoxyribonuclease I...    75   3e-15

>gi|134093450|ref|YP_001098525.1| putative nuclease [Herminiimonas
           arsenicoxydans]
          Length = 259

 Score =  414 bits (1065), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 186/257 (72%), Positives = 222/257 (86%)

Query: 1   MPKIVSANLNGIRSAAKKGFFEWLQKEAPDFVCVQELKAQAADMTDEFLAPAGYVGHFHY 60
           M KIVSANLNGIRSAAKKGFF+W+ + + D++CVQELKAQ ADMT +FL P GY G+FHY
Sbjct: 1   MLKIVSANLNGIRSAAKKGFFQWMARHSADYICVQELKAQEADMTPDFLTPEGYFGYFHY 60

Query: 61  AQKKGYSGVGVYSRRQPDSVRIGFGNTEFDDEGRYVECDYGDLTVISLYAPSGSSSEERQ 120
           A+KKGYSG GVY + +PD+V+IGF   EFD EGRYV+CD+G+L+VIS+Y PSGSS EERQ
Sbjct: 61  AEKKGYSGAGVYCKTKPDNVQIGFNCPEFDAEGRYVQCDFGNLSVISVYCPSGSSGEERQ 120

Query: 121 EAKFRFMEAFLPHLMELEKSGREVVICGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWMT 180
           +AKFRFM+ FLPHL+EL+  GRE VICGDWNIAH EIDLKN+K N+KNSGFLPEER W+T
Sbjct: 121 QAKFRFMDVFLPHLLELKSQGREFVICGDWNIAHNEIDLKNYKGNRKNSGFLPEEREWLT 180

Query: 181 RIFDQLGLVDVYRRLHPETTGEAYTWWSNRGQAWANNVGWRIDYHVSTPGIAAKAVSAAI 240
           R+FD++GLVDVYRRLHP TT E YTWWSNRGQA+A NVGWRIDY V+TP +AA+A +A I
Sbjct: 181 RVFDEVGLVDVYRRLHPGTTEECYTWWSNRGQAYAKNVGWRIDYQVATPSLAARAHAAEI 240

Query: 241 YKEQRFSDHAPLTVVYS 257
           YK +RFSDHAPLT+ Y+
Sbjct: 241 YKVERFSDHAPLTITYT 257


>gi|134095562|ref|YP_001100637.1| putative exodeoxyribonuclease III
           [Herminiimonas arsenicoxydans]
          Length = 237

 Score = 75.1 bits (183), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 106/237 (44%), Gaps = 13/237 (5%)

Query: 22  EWLQKEAPDFVCVQELKAQAADMTDEFLAPAGYVGHFHYAQKKGYSGVGVYSRRQPDSVR 81
           +WL     D +C+QE K          +  AGY     +  +K Y+GV + SR     V 
Sbjct: 3   QWLVDNPVDVLCLQETKTVDEKFPVAEIEAAGY--QVAFTGQKTYNGVAILSRHPITDV- 59

Query: 82  IGFGNTEFDDEG-RYVECDYGDLTVISLYAPSGSSSE-ERQEAKFRFMEAFLPHLMELEK 139
               N   DDE  R +      + ++  Y P+G S + ++   K  +++A    L + ++
Sbjct: 60  -TKNNPLLDDEQQRIIAGTIQGIRIVCAYVPNGQSPDSDKYIYKLNWLKALHEWLAQEQQ 118

Query: 140 SGREVVICGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWMTRIFDQLGLVDVYRRLHPET 199
              E+ + GD+NIA ++ D+ +  +          ERA   R+  ++G  D +R    E 
Sbjct: 119 QHPELALLGDYNIAPEDRDVHDPAAWAGQVLVSEPERAAFVRL-QEMGFTDAFRMF--EQ 175

Query: 200 TGEAYTWWSNRGQAWANNVGWRIDYHVSTPGIAAKAVSAAIYKEQRF----SDHAPL 252
             + Y+WW  R   +  N G RID+ + +  +AA+  +  I K  R     SDH P+
Sbjct: 176 PEKLYSWWDYRQMGFRLNRGLRIDHILLSAPLAARCSACVIDKVPRKWEQPSDHTPV 232


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.134    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 533,649
Number of extensions: 22421
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 2
Length of query: 258
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 178
Effective length of database: 736,747
Effective search space: 131140966
Effective search space used: 131140966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)