BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4557.p
         (219 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093451|ref|YP_001098526.1| orotate phosphoribosyltransfera...   366   e-103

>gi|134093451|ref|YP_001098526.1| orotate phosphoribosyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 221

 Score =  366 bits (939), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/220 (82%), Positives = 201/220 (91%), Gaps = 1/220 (0%)

Query: 1   VSNLRQEFIEFAVSAGVLRFGEFVTKAGRTSPYFFNAGLFSEGATLAQVARFYAQTLQDS 60
           ++NLRQEFI+F+V  GVLRFGEFVTKAGRTSPYFFNAGLF++G TLA++A FYAQTL DS
Sbjct: 1   MNNLRQEFIKFSVDTGVLRFGEFVTKAGRTSPYFFNAGLFNQGGTLARLADFYAQTLIDS 60

Query: 61  GVEYDMLFGPAYKGITLASATAVALAGMGRNVPFAFNRKEAKDHGEGGTIVGAKLQGKVV 120
           GVE+DMLFGPAYKGITLASATAVALA  GR+VPFAFNRKEAKDHGEGGT+VGAKLQG+VV
Sbjct: 61  GVEFDMLFGPAYKGITLASATAVALANKGRDVPFAFNRKEAKDHGEGGTMVGAKLQGRVV 120

Query: 121 IIDDVISAGTSVRESVDMIRAAGATPCAVLIALDRMERSGKDGALSELSAVQEVAREYDM 180
           IIDDVISAGTSVRESVDMIRAAGATPCAVLIALDRMERSG D ALS  SAVQEV+  Y M
Sbjct: 121 IIDDVISAGTSVRESVDMIRAAGATPCAVLIALDRMERSGADDALSAYSAVQEVSNTYGM 180

Query: 181 PVVSIGNLNDLFDYISN-GGDAGLAQYKDAVAAYRSRYGV 219
           PV+SIGNL+DLF+Y+SN G D+  AQY+DAV+AYR RYGV
Sbjct: 181 PVISIGNLSDLFEYLSNAGADSEQAQYRDAVSAYRKRYGV 220


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 416,814
Number of extensions: 17147
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 141
Effective length of database: 743,337
Effective search space: 104810517
Effective search space used: 104810517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)