BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4555.p
         (175 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093470|ref|YP_001098545.1| putative thioredoxin [Herminiim...   234   3e-63
gi|134095923|ref|YP_001100998.1| thioredoxin-related transmembra...    69   1e-13

>gi|134093470|ref|YP_001098545.1| putative thioredoxin
           [Herminiimonas arsenicoxydans]
          Length = 174

 Score =  234 bits (596), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 103/173 (59%), Positives = 135/173 (78%)

Query: 1   MQAQANAAKSGLMIKLAAVVVVAAIAAFAYFKVNAGNAAPDVTFTQLDGQQVALKDLRGK 60
           MQ    A +    +K+  ++++ A+A   Y  V+   A P+VTF  L GQ++  +DLRGK
Sbjct: 1   MQTSVPATQKRNWLKIVILLIIVALAVVGYLSVSKKEAIPEVTFVNLQGQKITSQDLRGK 60

Query: 61  VVMVNFWATSCTTCVGEMPKMIDTYNKFKDRGLDFVAVAMSYDPPNYVLNYTETRKLPFK 120
           VVM+NFWATSCTTCV EMP+M++T+NK+   GL+F+AVAM+YDPPNYVLN+ ETRKLPF 
Sbjct: 61  VVMINFWATSCTTCVKEMPEMVETFNKYNAHGLEFIAVAMAYDPPNYVLNFVETRKLPFT 120

Query: 121 VALDTQDKLANAFGDVKLTPTTFVIGKDGNIIKRYVGEPQFAELHQLLEKALA 173
           VALDTQ +LA +FG+++LTPTT VI K+G++IK+YVGEP FA LHQLLEKALA
Sbjct: 121 VALDTQGELAKSFGNIQLTPTTLVIDKNGHVIKKYVGEPDFAALHQLLEKALA 173


>gi|134095923|ref|YP_001100998.1| thioredoxin-related transmembrane
           protein [Herminiimonas arsenicoxydans]
          Length = 173

 Score = 68.9 bits (167), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 67/127 (52%), Gaps = 9/127 (7%)

Query: 48  DGQQVALKDLRGKVVMVNFWATSCTTCVGEMPKMIDTYNKFKDRGLDFVAVAMSYDPPNY 107
           DG+  AL   +GK ++VNFWAT C  CV EMP++     +   +G+  + + +  D P+ 
Sbjct: 49  DGKTHALSQWQGKTLIVNFWATWCAPCVEEMPELTALQTELAPQGIQILGLGI--DNPSN 106

Query: 108 VLNYTETRKL--PFKVALDTQDKLANAFGD-VKLTPTTFVIGKDGNIIKRYVG----EPQ 160
           +  +    K+  P  +A  T  +L+  FG+     P T +IG +G+I K Y+G    E  
Sbjct: 107 IREFAAKYKISYPLYIAGMTGTELSRQFGNQAGGLPFTVIIGPNGDIKKTYLGRLKMEQL 166

Query: 161 FAELHQL 167
            A++H L
Sbjct: 167 RADIHSL 173


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 288,315
Number of extensions: 10181
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 2
Length of query: 175
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 99
Effective length of database: 749,927
Effective search space: 74242773
Effective search space used: 74242773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)