BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4552.p
         (122 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093465|ref|YP_001098540.1| hypothetical protein HEAR0176 [...   138   9e-35

>gi|134093465|ref|YP_001098540.1| hypothetical protein HEAR0176
           [Herminiimonas arsenicoxydans]
          Length = 99

 Score =  138 bits (347), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 60/99 (60%), Positives = 80/99 (80%)

Query: 24  LAYLQRQGLTLVERNFRCKGGEIDLILREGATVVFVEVRARASAAYGGAAASITPAKQRR 83
           + YLQ+QGL L+ERNFRCKGGEIDL++++G T+VFVEVR RA   +GGAAAS+TP KQ+R
Sbjct: 1   MRYLQKQGLALIERNFRCKGGEIDLVMQDGDTLVFVEVRKRADKNHGGAAASVTPEKQKR 60

Query: 84  LLLAAQVWLQGQPGLPPCRFDVIALEGGQMQWLRNAISA 122
           L++AA ++LQ     P CRFDVIA++  +M WL+NAI +
Sbjct: 61  LIVAAHIFLQRYKMPPACRFDVIAIDATEMNWLKNAIES 99


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 207,911
Number of extensions: 6214
Number of successful extensions: 16
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 122
Length of database: 1,000,347
Length adjustment: 71
Effective length of query: 51
Effective length of database: 766,402
Effective search space: 39086502
Effective search space used: 39086502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 123 (52.0 bits)