BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4550.p
         (307 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093463|ref|YP_001098538.1| putative uroporphyrin-III C/tet...   379   e-107
gi|134095272|ref|YP_001100347.1| hypothetical protein HEAR2082 [...    74   6e-15

>gi|134093463|ref|YP_001098538.1| putative uroporphyrin-III
           C/tetrapyrrole (Corrin/Porphyrin) methyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 298

 Score =  379 bits (974), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/288 (67%), Positives = 227/288 (78%), Gaps = 1/288 (0%)

Query: 14  DAAQQTYPVSALYVLATPIGNVCDISLRGLHVLALADAVACEDTRNTSQLLQRYGLSKQL 73
           D AQQTYP + LYV+ATPIGN  DISLR LH L++ DA+ACEDTRNT  LL RYGLSK L
Sbjct: 8   DIAQQTYPSATLYVVATPIGNAGDISLRALHTLSIVDAIACEDTRNTGHLLTRYGLSKNL 67

Query: 74  LATHEHNEREAAAKIIERLQAGQRVALVSDAGTPAVSDPGARVVDAVRAAGFQVIPLPGA 133
           +A H+HNERE A K+I RLQAG+R+ALVSDAGTPAVSDPGAR+VDAVR AG +V+PLPG 
Sbjct: 68  IAAHQHNEREVAEKLISRLQAGERIALVSDAGTPAVSDPGARIVDAVRNAGLRVVPLPGP 127

Query: 134 SAAVTALSASGLADARFLFVGFLPAKTRQRETALQELVDQQAALVFYEAPHRIVETVQSM 193
           SAAV ALSASGL + +F FVGFLPAK +QRET L  L    A +VFYEAPHRI ETV ++
Sbjct: 128 SAAVAALSASGLLNDQFYFVGFLPAKAKQRETFLFGLKSVAATMVFYEAPHRIHETVAAL 187

Query: 194 LQVFGPTRQVVLARELTKLFEHIHRCPLGEAPAWLEQDANRQRGEFVVLLEGAQPVEGED 253
           +  F PTR +V ARELTKLFE IHRC L EA AW+E D +RQ+GEFVVLLEGA     +D
Sbjct: 188 VAAFEPTRHIVFARELTKLFEEIHRCTLAEASAWIEADVHRQKGEFVVLLEGAPVASDQD 247

Query: 254 -AEGERVLRILLEELPVKQAAALAAQITGQKKNALYERALQIRQGAQE 300
             E ER+L+ILL+E  VKQAA L A ITGQKKNALY+RALQ++  A +
Sbjct: 248 QLETERILKILLQECSVKQAATLTAHITGQKKNALYDRALQLKGEADD 295


>gi|134095272|ref|YP_001100347.1| hypothetical protein HEAR2082
           [Herminiimonas arsenicoxydans]
          Length = 250

 Score = 74.3 bits (181), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 109/238 (45%), Gaps = 29/238 (12%)

Query: 29  ATPIGNVCDISLRGLHVLALADAVACEDTRNTSQLLQRYGLSKQLLAT---------HEH 79
           A P+ ++  + ++   + A  D    E+ + T   L+  G    L+           + +
Sbjct: 20  ADPLAHIIPVEVQA--ITAKLDYFIAENAKTTRAFLKLIGTRNALIKPIQEICIAELNVN 77

Query: 80  NEREAAAKIIERLQAGQRVALVSDAGTPAVSDPGARVVDAVRAAGFQVIPLPGASAAVTA 139
            + +    ++E + AGQ   L+S+AG PAV+DPGA +V    A G QV PL G S+ + A
Sbjct: 78  TDTKNLPALLEPILAGQDAGLISEAGVPAVADPGANLVRLAHAQGIQVKPLVGPSSLLLA 137

Query: 140 LSASGLADARFLFVGFLPAKTRQRETALQELVDQQAA----LVFYEAPHRIVETVQSMLQ 195
           + ASGL+   F F G+LP     R   +++L ++  A      F E P+R    ++++  
Sbjct: 138 VMASGLSGQNFAFNGYLPIDAVTRIKRIKQLEERSRAEKQTQFFIETPYRNAGMLENLAA 197

Query: 196 VFGPTRQVVLARELTKLFEHIH---------RCPLGEAPAWLEQDANRQRGEFVVLLE 244
                  + +A +LT   E+I           C  G+ P     D +++   F++L E
Sbjct: 198 HCSGNTLISVATDLTLPSENIQTKTAAKWKAECSSGKMP-----DFHKKPTVFLLLAE 250


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.131    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 509,038
Number of extensions: 19195
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 2
Length of query: 307
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 226
Effective length of database: 733,452
Effective search space: 165760152
Effective search space used: 165760152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)