BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4549.p
         (409 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093462|ref|YP_001098537.1| putative lipoprotein with signa...   310   6e-86

>gi|134093462|ref|YP_001098537.1| putative lipoprotein with signal
           peptide [Herminiimonas arsenicoxydans]
          Length = 336

 Score =  310 bits (795), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 182/339 (53%), Positives = 224/339 (66%), Gaps = 48/339 (14%)

Query: 71  PALPAAGSGRGGYYKDDGPGDHIPDGLLDVADAEPQVEPISKAASRPYAVFGKTYVPITD 130
           P LP AGSGRGGYYKDDGPGD  P+GLLD  DAEP+VEP S   ++PY VFGK YVP+TD
Sbjct: 46  PVLPPAGSGRGGYYKDDGPGDVTPEGLLDTPDAEPRVEPYSTRGNKPYVVFGKRYVPMTD 105

Query: 131 NNQPFIQRGIGSWYGKKFHGQKTSSGELYDMYKMTAAHPTLPIPSYARVTNLKTGKQVIV 190
             +PF Q+G GSWYGKKFHGQKTSSGE YDMY+M+AAHPTLPIPSYARVTNL  GKQVIV
Sbjct: 106 E-RPFRQQGRGSWYGKKFHGQKTSSGEPYDMYQMSAAHPTLPIPSYARVTNLSNGKQVIV 164

Query: 191 RINDRGPFHSNRIIDLSYTAALKLGYLGTGSSELEVERILPDEAQRMADARRNGSSTTML 250
           R+NDRGPFHS+R+IDLSYTAALKLGY+G GS+ LEVER+LP + +++   + + SS  + 
Sbjct: 165 RVNDRGPFHSSRVIDLSYTAALKLGYIGHGSASLEVERLLPADIEQILANKGSASSPAV- 223

Query: 251 AAADPINRAADTGAGVSTGAVEINRVSAQNLPPQPTVAAVQPINASTSSAAGGAGLAGGG 310
                   A +T   VS  AVE N ++A   P  P   AV+                G  
Sbjct: 224 --------ATET---VSAPAVETNALTA---PVMPAAVAVE----------------GNA 253

Query: 311 GIINAVASGTAPSPAMPQAVPLTAGYYLQFGAYSQEANALVARDKLLPSLSGIVDNMQAV 370
           G  +AV       PA        +G+YLQFGAYSQ ANA V R +L  +   ++  ++  
Sbjct: 254 GKTSAV-------PA--------SGFYLQFGAYSQAANAEVVRARLAQNAGYLLPQLRVE 298

Query: 371 QVNGLYRLYAGPYPTRPEAQNAAMLVRQRSAGTPFIVER 409
             N LYRLY+GP+ +R EA  AA+ V++  A  PFIV+R
Sbjct: 299 PSNNLYRLYSGPFASRNEAAAAAVQVQEPVA-KPFIVQR 336


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.131    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 785,290
Number of extensions: 33530
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 325
Effective length of database: 723,567
Effective search space: 235159275
Effective search space used: 235159275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 130 (54.7 bits)