BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4546.p
         (169 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093459|ref|YP_001098534.1| putative rod shape-determining ...   234   2e-63

>gi|134093459|ref|YP_001098534.1| putative rod shape-determining
           protein mreD [Herminiimonas arsenicoxydans]
          Length = 171

 Score =  234 bits (596), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 120/171 (70%), Positives = 148/171 (86%), Gaps = 2/171 (1%)

Query: 1   MNNQ--TILLPASPLFIAFSLIVAFVLNLMPWGQMVGVPDFVALALVFWNIHQPRKVGIS 58
           MN+Q   ILLPASPLFIA SLI+AF+LNL+PWGQ +G+PDFVAL LVFW++HQPR+VGI 
Sbjct: 1   MNHQPHYILLPASPLFIAVSLIIAFLLNLLPWGQWIGIPDFVALILVFWSMHQPRRVGIG 60

Query: 59  AAFLMGLLMDVNESTLLGENALAYTLLSYFAIMIHRRVLWFPLRTQALHVLPLMLLAQAV 118
            AF MGLLMDV+++ +LGENALAYTLLSYFAIMIHRRVLWFPL TQALHV  L+L+AQ V
Sbjct: 61  VAFFMGLLMDVHDAAVLGENALAYTLLSYFAIMIHRRVLWFPLGTQALHVFVLLLVAQLV 120

Query: 119 QLVIQLLVTGKSPDWFYFSESVVSALLWPVVSILLLAPQRRAVDRDENRPI 169
            L+++L+V G  P W YF+ES V+ALLWP+V+ +LLAPQRRA++RD+ RP+
Sbjct: 121 ALIVRLMVGGNFPGWLYFTESAVAALLWPLVTWILLAPQRRAINRDDTRPL 171


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.330    0.141    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 274,225
Number of extensions: 9343
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 94
Effective length of database: 753,222
Effective search space: 70802868
Effective search space used: 70802868
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 125 (52.8 bits)