BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4545.p
         (382 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093458|ref|YP_001098533.1| rod shape-determining protein M...   358   e-100

>gi|134093458|ref|YP_001098533.1| rod shape-determining protein MreC
           [Herminiimonas arsenicoxydans]
          Length = 295

 Score =  358 bits (920), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/308 (59%), Positives = 221/308 (71%), Gaps = 16/308 (5%)

Query: 53  MHVLGTLRQALGTALYPFQTVAMVPRDAFTNSADYFSSMASLQKENHQLRQQQIVNAQLM 112
           M  L  +RQA+ TALYP Q VA+ PRDA     DYF S++ L+ EN +L+ QQ +N   +
Sbjct: 1   MRSLAMVRQAVSTALYPLQVVALAPRDALYFIGDYFGSLSDLKSENEKLKLQQTINGHTL 60

Query: 113 QQERLLAAENAQLRKLLDMQQKVPVKSIVGEILYDARDPFTRKIILNRGSQQGVMPGQPV 172
           QQ + L AEN QLR+LL   +++PVKS++GEILYD RD FTRKI+L+RG Q GV  GQPV
Sbjct: 61  QQGQQLLAENMQLRRLLGTAERLPVKSVLGEILYDTRDAFTRKIVLDRGIQHGVALGQPV 120

Query: 173 IDDVGIVGQVTRVFPFTSEVTLLTDKDQAIPVQVLRNGLRSVAYGRGQTGALDLRFMPAN 232
           ID +G+VGQVTRVFPFTSEVTLLTDK+QAIPVQV+RNGLRSVAYGRGQ+  LDLRFMP N
Sbjct: 121 IDHIGVVGQVTRVFPFTSEVTLLTDKNQAIPVQVVRNGLRSVAYGRGQSNVLDLRFMPTN 180

Query: 233 ADIQKGDVLVTSGIDGVYPPGLSVASVVLVETRSADSFARIVCRPLAGIDRHRQLLILLV 292
           ADIQKGD+LVTSGIDGVYP GL+VA+V  VE +S DSFARIVC+P AGIDR+RQLLILL 
Sbjct: 181 ADIQKGDILVTSGIDGVYPAGLAVATVSQVENKSVDSFARIVCQPTAGIDRNRQLLILLT 240

Query: 293 EQNMPPRPEPDVVDEKSAKLFKRRLRDSTRDNGGEEASASQKDKPTEERKGAAEVTP--P 350
           E  + PRP PD   EK+++        + R NG                KG  E  P  P
Sbjct: 241 ENKLAPRP-PDDGKEKNSRTAGILRHAANRTNG-------------TSGKGIVEAAPAAP 286

Query: 351 AAKPAAAA 358
            ++PA ++
Sbjct: 287 TSQPATSS 294


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 610,540
Number of extensions: 23811
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 299
Effective length of database: 726,862
Effective search space: 217331738
Effective search space used: 217331738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)