BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4543.p
         (100 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093456|ref|YP_001098531.1| aspartyl/glutamyl-tRNA amidotra...   160   1e-41

>gi|134093456|ref|YP_001098531.1| aspartyl/glutamyl-tRNA
           amidotransferase subunit C [Herminiimonas
           arsenicoxydans]
          Length = 100

 Score =  160 bits (406), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 76/100 (76%), Positives = 93/100 (93%)

Query: 1   MSLALSDVKRIANLSRLELTEAQAEQTLDKLNGIFALVEQMKAIDTSGVEPLSHPIAAIE 60
           MSLALSDVKR++ L++++LT+AQ+ QTLDKLNGIFALVEQ+ A+DT+GVEPL+HPIAA+ 
Sbjct: 1   MSLALSDVKRLSMLAQIDLTDAQSAQTLDKLNGIFALVEQLSAVDTTGVEPLNHPIAALL 60

Query: 61  PALALRLREDVVTESNRREDYQQPAPATQDGLYLVPKVIE 100
           P L+LRLR+DVV+E NRR+DYQQ APATQDGLYLVPKVIE
Sbjct: 61  PDLSLRLRDDVVSEPNRRDDYQQVAPATQDGLYLVPKVIE 100


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.313    0.130    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 169,905
Number of extensions: 5885
Number of successful extensions: 21
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 100
Length of database: 1,000,347
Length adjustment: 68
Effective length of query: 32
Effective length of database: 776,287
Effective search space: 24841184
Effective search space used: 24841184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 121 (51.2 bits)