BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4538.p (534 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 496 e-141 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 495 e-141 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 487 e-139 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 374 e-105 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 372 e-104 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 496 bits (1276), Expect = e-141, Method: Compositional matrix adjust. Identities = 295/545 (54%), Positives = 377/545 (69%), Gaps = 20/545 (3%) Query: 1 MKNLKIGARLTIGFIALLMLMIVMVGLGAWRLGSIGDATDAMIQVALKKERDAVQWHAAI 60 KNLKIG RL + F LL+LM M +G RL + AT +++ A KER A QW I Sbjct: 3 FKNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAKAT-VLMEEATIKERLAQQWIKGI 61 Query: 61 KENGVRTFAVMKSDDPAVQQYFQKQIDAQSAKVSQLQKQVEAAITTPEEKQLFEHVGKLR 120 + N VRTFA +++ DP + Q+++ A SA VS+ Q ++E + + E K+L V + R Sbjct: 62 ETNTVRTFARVRTSDPEQDKILQQEMSAISAAVSKQQDELETLVVSAEGKKLLATVAEKR 121 Query: 121 TTYRETRQNIFDIKKAGDPTRAREMTDTILVKLM---DDYANSVLRYAEFQKKVIDETAA 177 TY R ++ ++++A R E+ + I K+ D Y SV Q ++ Sbjct: 122 ATYTAIRDDVMNLREA----RGAELQNAIANKMKPAADAYIQSVEAVVNAQINNFEDAKG 177 Query: 178 DINHNYRSGRSMLVILGACELVLGALLAWLLTRSITAPLNQALAIAQSVAAGDLSSRIDS 237 ++ Y+S R +L++LG L LG +LAW+LTRSIT PL+ A+++A+ VA+GDL+ RI Sbjct: 178 RVDTIYQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLDYAVSVARLVASGDLTGRITV 237 Query: 238 DARDETGQLLTALKSMNDNLQDIVGRVRVGTESINATSREIATGNLDLSARTEQQAGSLE 297 D++DETGQLL ALK MND+L + +VR G ++I S +IA+GNLDLS+RTE+QA SLE Sbjct: 238 DSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASSLE 297 Query: 298 ETASVMEQLTSTVKQNADNARQANQLAASASQVASQGGAVVDQVVATMSQIHASSEKIAD 357 ETAS ME+LTSTVKQNADNARQANQLA +AS VA +GG VV +VV TM I+ S+ KI D Sbjct: 298 ETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKIVD 357 Query: 358 IIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDE 417 IIGVID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK LID+ Sbjct: 358 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDD 417 Query: 418 SVAKVGDGSRLVAQAGDTMHEVVHSVARVTEIVGEITRASQEQSDGIGQVNLAIAHIDEA 477 SV KV GS+LVA+AG TM EVV SV RVT+I+ EI ASQEQS GI QVN AI +D+ Sbjct: 418 SVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMDQV 477 Query: 478 TQQNAALVEEAAAAARSMQDQAASLTEAVSVFRLD---------TRV---VATPPANLQR 525 TQQNAALVEEAAAAA S+ +QAA+L +AVS+F+LD TR+ + PA Q Sbjct: 478 TQQNAALVEEAAAAAESLNEQAANLAQAVSIFKLDGVANSSRVATRLPVAASNAPATRQF 537 Query: 526 GTSPS 530 SP+ Sbjct: 538 AASPA 542 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 495 bits (1274), Expect = e-141, Method: Compositional matrix adjust. Identities = 297/520 (57%), Positives = 373/520 (71%), Gaps = 4/520 (0%) Query: 3 NLKIGARLTIGFIALLMLMIVMVGLGAWRLGSIGDATDAMIQVALKKERDAVQWHAAIKE 62 NLKIG RL + F +L+LM M+ +G WRL + AT M + A ++ER ++QWHA Sbjct: 5 NLKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQATVRMEEAA-EQERLSIQWHAGNSA 63 Query: 63 NGVRTFAVMKSDDPAVQQYFQKQIDAQSAKVSQLQKQVEAAITTPEEKQLFEHVGKLRTT 122 N +RT A ++S + VQQ FQ ++ AQS ++++LQ ++E+ I + E K+L VG RT Sbjct: 64 NAIRTTARIRSTNQEVQQQFQNEMTAQSVEITKLQNKLESLIHSEEGKKLMSAVGDKRTV 123 Query: 123 YRETRQNIFDIKKAGDPTRAREMTDTILVKL---MDDYANSVLRYAEFQKKVIDETAADI 179 Y + R+ +F +K G P E I K+ ++ Y+ +V +FQ+ E ++ Sbjct: 124 YMDIRKEVFKLKADGSPAAEEEAKKIIASKMDPALETYSKTVQDVVDFQQVTFLEAKTEV 183 Query: 180 NHNYRSGRSMLVILGACELVLGALLAWLLTRSITAPLNQALAIAQSVAAGDLSSRIDSDA 239 ++ Y SGR L+ LGA L L ALLAWLL+RSIT PL A+ +A++VA GDL +RI+ ++ Sbjct: 184 DNLYASGRMFLLTLGAIALALSALLAWLLSRSITRPLEYAVEVARTVAGGDLRNRIEVNS 243 Query: 240 RDETGQLLTALKSMNDNLQDIVGRVRVGTESINATSREIATGNLDLSARTEQQAGSLEET 299 DETGQLL AL+ MND L V VR G E+I S +IA GNLDLS+RTE+QA SLEET Sbjct: 244 SDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLDLSSRTEEQASSLEET 303 Query: 300 ASVMEQLTSTVKQNADNARQANQLAASASQVASQGGAVVDQVVATMSQIHASSEKIADII 359 AS ME+LTSTVKQNADNARQANQLA SAS VA +GG VV QVV TM I++S++KI DII Sbjct: 304 ASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDTMEDINSSAKKIVDII 363 Query: 360 GVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDESV 419 GVID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LI +SV Sbjct: 364 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTLIGDSV 423 Query: 420 AKVGDGSRLVAQAGDTMHEVVHSVARVTEIVGEITRASQEQSDGIGQVNLAIAHIDEATQ 479 KV GS+LVA+AG TM EVV+SV RVT+I+ EI ASQEQS GI QVN AI +D+ TQ Sbjct: 424 DKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGIEQVNQAIGQMDQVTQ 483 Query: 480 QNAALVEEAAAAARSMQDQAASLTEAVSVFRLDTRVVATP 519 QNAALVEEAAAAA S+ +QA L EAVSVF+LD +TP Sbjct: 484 QNAALVEEAAAAAESLNEQAGKLAEAVSVFKLDGVAASTP 523 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 487 bits (1253), Expect = e-139, Method: Compositional matrix adjust. Identities = 287/513 (55%), Positives = 372/513 (72%), Gaps = 7/513 (1%) Query: 3 NLKIGARLTIGFIALLMLMIVMVGLGAWRLGSIGDATDAMIQVALKKERDAVQWHAAIKE 62 N+KIG RL +GF +L+L+ M G RL +I A+ ++ +L ++ A W Sbjct: 5 NMKIGTRLGLGFGLILLLVAAMGATGIMRLENINGASRHLVDDSLSMQKSAQNWLLGTSV 64 Query: 63 NGVRTFAVMKSDDPAVQQYFQKQIDAQSAKVSQLQKQVEAAITTPEEKQLFEHVGKLRTT 122 N RT A++K+ DP Q++FQK I AQS +++++QK +E I + +EK+LF V K R+ Sbjct: 65 NASRTLALVKASDPESQEFFQKAITAQSKQITEIQKSIEDRINSDKEKELFAEVAKKRSA 124 Query: 123 YRETRQNIFDIKKAGDPTRAREMTDTILVKLMDDYANSV---LRYAEFQKKVIDETAADI 179 Y + R++I +K G+ A +M DT +V +D Y +SV L + E + K+ DE+ I Sbjct: 125 YIDIRKSILGVKAGGNIAEANQMIDTKMVPALDAYVDSVKNVLGHYENEVKLADES---I 181 Query: 180 NHNYRSGRSMLVILGACELVLGALLAWLLTRSITAPLNQALAIAQSVAAGDLSSRID-SD 238 +Y SGR L+I ++LG L+AW LT IT PL++AL +A+SVA GDL++R D ++ Sbjct: 182 TDDYLSGRMALIIGAVIAILLGTLIAWRLTVGITRPLHEALKVAESVAEGDLTARSDMAE 241 Query: 239 ARDETGQLLTALKSMNDNLQDIVGRVRVGTESINATSREIATGNLDLSARTEQQAGSLEE 298 +DE G LL+AL M NL V ++R+GT++I S EIA+GNLDLS+RTEQQA SLEE Sbjct: 242 TQDEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQQASSLEE 301 Query: 299 TASVMEQLTSTVKQNADNARQANQLAASASQVASQGGAVVDQVVATMSQIHASSEKIADI 358 TAS ME+LTSTVKQNADN+RQANQLA +AS VA +GGAVV QVV TM I+ S++KI DI Sbjct: 302 TASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNSAKKIVDI 361 Query: 359 IGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDES 418 IGVID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK LI +S Sbjct: 362 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIGDS 421 Query: 419 VAKVGDGSRLVAQAGDTMHEVVHSVARVTEIVGEITRASQEQSDGIGQVNLAIAHIDEAT 478 V KV GS+LVA+AG TM E+V V RV +I+ EIT ASQEQSDGI QVN A++ +D+ T Sbjct: 422 VEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAVSQMDQVT 481 Query: 479 QQNAALVEEAAAAARSMQDQAASLTEAVSVFRL 511 QQNAALVEEAAAAA S+QDQA +L EAVSVFR+ Sbjct: 482 QQNAALVEEAAAAAESLQDQARNLAEAVSVFRV 514 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 374 bits (961), Expect = e-105, Method: Compositional matrix adjust. Identities = 255/541 (47%), Positives = 335/541 (61%), Gaps = 24/541 (4%) Query: 1 MKNLKIGARLTIGFIALLMLMIVMVGLGAWRLGSIGDATDAMIQVALKKERDAVQWHAA- 59 +KN+ I RL + + M M+++VG GA + + + + + + + + H+ Sbjct: 2 LKNISIKFRLLLTMV--FMGMMLIVG-GAMGILGVQTTNNTLQNIYVNQMPSSEAIHSMM 58 Query: 60 ---IKENGVRTFAVMKSDDPAVQQYFQKQIDAQSAKVSQLQKQVEAAITTPEEKQLFEHV 116 ++ M+ + ++ ++ + + +K + I T EE+++ + V Sbjct: 59 TRLLQARAGLNLVAMRPHEEGSERILKRAENFYLQSEEEWKKYLSLPIETLEERKVADEV 118 Query: 117 GKLRTTY-RETRQNIFDIKKAGDPTRAREMTDTILVKLMDDYANSVLR----YAEFQKKV 171 R Y +E Q + +AG R E+ D ILV M S+ + E Q K Sbjct: 119 TAKRIRYLKEAEQGLIAALRAG---RNEEVED-ILVNKMPPLFQSLTKSTDELVELQMKS 174 Query: 172 IDETAAD---INHNYRSGRSMLVILGACELVLGALLAWLLTRSITAPLNQALAIAQSVAA 228 D + H +R + V+LG L+ A+ A+ L R+IT PL + L ++A+ Sbjct: 175 AATGYQDSQTLFHYFRIIAVVGVLLG---LIGVAIYAFFLIRAITGPLKEMLLHFDTIAS 231 Query: 229 GDLSSRIDSDARDETGQLLTALKSMNDNLQDIVGRVRVGTESINATSREIATGNLDLSAR 288 GDL+S I+ +R+E G L+ L+ M L D V +VR G+ +I+ + EIA GNLDLS+R Sbjct: 232 GDLTSNIEVKSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSR 291 Query: 289 TEQQAGSLEETASVMEQLTSTVKQNADNARQANQLAASASQVASQGGAVVDQVVATMSQI 348 TEQQA SLEETAS ME+LTSTVKQN DNARQANQLA SAS VA +GGAVV VV TM I Sbjct: 292 TEQQAASLEETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAI 351 Query: 349 HASSEKIADIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAA 408 + S+ KI DIIGVID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AA Sbjct: 352 NTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAA 411 Query: 409 KEIKQLIDESVAKVGDGSRLVAQAGDTMHEVVHSVARVTEIVGEITRASQEQSDGIGQVN 468 KEIK LID+SV KV G+RLVA+AG TM EVV SV RVT+I+ EI ASQEQS GI QVN Sbjct: 412 KEIKHLIDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVN 471 Query: 469 LAIAHIDEATQQNAALVEEAAAAARSMQDQAASLTEAVSVFRLDTRVVATPPANLQRGTS 528 AI +DE TQQNAALVE+AAAAA S++DQA +L+ VSVF+L + P NL Sbjct: 472 TAIVQMDEVTQQNAALVEQAAAAASSLRDQATNLSTVVSVFKLQGH--QSAPQNLVPQAR 529 Query: 529 P 529 P Sbjct: 530 P 530 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 372 bits (955), Expect = e-104, Method: Compositional matrix adjust. Identities = 257/521 (49%), Positives = 330/521 (63%), Gaps = 18/521 (3%) Query: 1 MKNLKIGARLTIGFIALLMLMIVMVGLGAWRLGSIGDATDAMIQVALKKERDAVQWHAAI 60 +KN+ I + L + +L ++++ G L S+ A+ V + Q + I Sbjct: 2 LKNITIKSLL---LFVMGILSLLLIATGILGLTSLDTTNKALRSVYEDRTVPIGQLNTVI 58 Query: 61 KENGVRTFAVMKS--DDPAVQQYFQKQIDAQSAKVSQLQKQVEAAITTPEEKQLFEHVGK 118 + + + S DP + I+ S +++Q A+ TPE K L + Sbjct: 59 TLSTINQLDLAASIYGDPGLVIPKMDAIEKHSKEINQAFDAFMASTLTPEAKVLADKFAA 118 Query: 119 LRTTYRE-TRQNIFDIKKAGDPTRAREMTDTILVKLMDDYANSVLRYAEFQ----KKVID 173 R + E Q + G+ R E+ + + +L+ V + + KK + Sbjct: 119 DRKIFLEKALQPAIAASRGGNVLRVTEIVNGPMEELITPVRAGVAALIDLELREAKKAFE 178 Query: 174 E--TAADINHNYRSGRSMLVILGACELVLGALLAWLLTRSITAPLNQALAIAQSVAAGDL 231 E T + N G +I G ++L +A+ L R I PL+ A+ IA+SVAAGDL Sbjct: 179 ESQTRFVMVRNISIGA---IIFG---VLLAGFMAFWLIRLIARPLHDAVQIARSVAAGDL 232 Query: 232 SSRIDSDARDETGQLLTALKSMNDNLQDIVGRVRVGTESINATSREIATGNLDLSARTEQ 291 + +I ++ +ETGQLL ALK MND+L V VR GTE+I S EIA+GN DLS+RTE Sbjct: 233 TQQIHVNSTNETGQLLQALKDMNDSLSKTVSAVRRGTETITVASGEIASGNADLSSRTEA 292 Query: 292 QAGSLEETASVMEQLTSTVKQNADNARQANQLAASASQVASQGGAVVDQVVATMSQIHAS 351 QAGSLEETAS ME+LTSTV+QNADNARQANQL SA++VA +GG+VV +VV TM I S Sbjct: 293 QAGSLEETASSMEELTSTVRQNADNARQANQLVVSATEVAVKGGSVVSEVVITMGSIKDS 352 Query: 352 SEKIADIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEI 411 S KI DIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKEI Sbjct: 353 SRKIVDIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAAKEI 412 Query: 412 KQLIDESVAKVGDGSRLVAQAGDTMHEVVHSVARVTEIVGEITRASQEQSDGIGQVNLAI 471 K LID+SV KV GS+LV QAG TM E+V SV V +I+ EIT ASQEQSDGI QVN AI Sbjct: 413 KALIDDSVHKVDAGSKLVDQAGSTMQEIVTSVKHVADIMSEITSASQEQSDGIEQVNQAI 472 Query: 472 AHIDEATQQNAALVEEAAAAARSMQDQAASLTEAVSVFRLD 512 + +DE TQQNAALVE+AAAAA+SMQDQA L+ AV++F+LD Sbjct: 473 SQMDEMTQQNAALVEQAAAAAQSMQDQAVELSGAVAIFKLD 513 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.126 0.329 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 697,737 Number of extensions: 21887 Number of successful extensions: 188 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 142 Number of HSP's successfully gapped: 15 Length of query: 534 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 448 Effective length of database: 716,977 Effective search space: 321205696 Effective search space used: 321205696 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)