BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4536.p
         (419 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096405|ref|YP_001101480.1| allantoate amidohydrolase [Herm...   261   4e-71

>gi|134096405|ref|YP_001101480.1| allantoate amidohydrolase
           [Herminiimonas arsenicoxydans]
          Length = 432

 Score =  261 bits (667), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 163/406 (40%), Positives = 211/406 (51%), Gaps = 16/406 (3%)

Query: 12  IDGARLWNSLMELAQIGGTPKGGVCRLALTDLDKQGRDLVTSWARAEGMSVVVDQIGNIF 71
           I+  RL  ++  LAQ GG   GGV R  LT +D   R  +   AR+ G  V +D+  N+F
Sbjct: 22  INNERLQKAIAALAQFGGRDDGGVARETLTPIDLASRRHLIELARSLGCEVEIDECANLF 81

Query: 72  MRRPGRNNALPPVMTGSHIDTQPTGGKFDGNYGVLAGIEVIRTLNQHNIQTEAPIEVAVW 131
            RRPG  + LPPV+TGSH DTQP GGK DG YGV+AG+EVI  LN   I T   IEV  W
Sbjct: 82  FRRPGSTD-LPPVLTGSHGDTQPVGGKLDGAYGVIAGLEVIAALNDAGITTRRAIEVVAW 140

Query: 132 TNEEGSRFVPVMMGSGVFCGAFTLEHAYHATDVDGKNVRDELERIGYIGEQVCGE---HP 188
           TNEEGSRF P  MGS  +     L       D D  +    L+        V       P
Sbjct: 141 TNEEGSRFGPGAMGSSAYVEPERLTAYRAVLDKDQISFGAALDACLAEASDVSRRAPLRP 200

Query: 189 IGAYYEAHIEQGPVLENADTVIGVVPAVLGLSWYDCTVTGFESHAGPTPMEIRKDALQVS 248
           + +  E HIEQGPVLE A   +GVV  +  + W+     G  +HAG TPM+ R DA+  +
Sbjct: 201 LDSCVELHIEQGPVLERAGAGLGVVDGIQSVRWFRVVCNGMAAHAGTTPMDKRSDAMAAA 260

Query: 249 TYIMQEVVA-IAHRYAPYGRGTVGQVQVLPNSRNVIPGQVKFSIDLRNVSEASLTRMHED 307
             I Q++ A  A   A   R T+G+ QV PNS N IPG V+F+ID+R V  + L R  + 
Sbjct: 261 VGIAQQLYAHAAQEAASNVRLTLGRWQVGPNSVNTIPGTVEFTIDMRCVDASVLDRFEQL 320

Query: 308 LLAYLEAMRKKTGLSIELERVSYFPPCPFH-PHCVDNV------RAAAAALGYKTMDVVS 360
           L         +  +++E     +F   P H P  +  +      RA+A A     + + S
Sbjct: 321 LHRATADFPWRGNITVE----CFFSRAPTHFPQAMLTLIERACTRASAQAGRPAPLHLTS 376

Query: 361 GAGHDAIYAARLAPAGMIFVPCKDGVSHNEIEDARPEHLEAGCNVL 406
           GA HDA+Y A   P  MIFVP K G+SHN  E+  PE L  G   L
Sbjct: 377 GAFHDAMYLADYCPTAMIFVPSKGGISHNAAEETAPEDLLLGAQAL 422


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 852,869
Number of extensions: 37169
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 335
Effective length of database: 723,567
Effective search space: 242394945
Effective search space used: 242394945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)