BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4535.p (234 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095636|ref|YP_001100711.1| high-affinity branched-chain am... 203 5e-54 gi|134095847|ref|YP_001100922.1| high-affinity branched-chain am... 179 1e-46 gi|134096407|ref|YP_001101482.1| high-affinity branched-chain am... 173 7e-45 gi|134093662|ref|YP_001098737.1| branched-chain amino acid ABC t... 145 2e-36 gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 144 3e-36 >gi|134095636|ref|YP_001100711.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 241 Score = 203 bits (517), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 102/235 (43%), Positives = 155/235 (65%), Gaps = 7/235 (2%) Query: 2 ILQVQDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPAQ--GQV 59 +L++ + YG ++G+ L V GE++TL+G NGAGKTTTLK+I G +P + G + Sbjct: 5 VLKIAGLKVAYGGIQAVKGIDLDVRQGELITLIGANGAGKTTTLKAITGTLPECRVDGHI 64 Query: 60 LFEGKVISGLPSYQIAARGVCLVPEHRGIFKLLTVEENLTMAA-----RKESAWGLEEIY 114 + G+ I GL S+++ + + +VPE RG+F ++++ENL M A ++ A +E+ + Sbjct: 65 EYAGQAIKGLGSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRNDKQGIADDMEKWF 124 Query: 115 AIFPRLKERRKNGGGQLSGGEQQMLAIARALMTHPHVLMLDEPVEGLAPVIVDEIVAQIK 174 A+FPRLKER G LSGGEQQMLA+ARALM+HP +L+LDEP GL+P++V++I I+ Sbjct: 125 AVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPQLLLLDEPSMGLSPIMVEKIFEVIR 184 Query: 175 QIKSTGMSIILVEQNLEVCTQLADRHYIVEQGRIVYSGSNAQFLADEGVKDRYLG 229 + + G++I+LVEQN + Q A R Y++E G I G Q L D V++ YLG Sbjct: 185 SVAAQGITILLVEQNARLALQAAHRAYVMESGLITMQGDAQQMLNDPKVREAYLG 239 >gi|134095847|ref|YP_001100922.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 243 Score = 179 bits (453), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 96/236 (40%), Positives = 144/236 (61%), Gaps = 8/236 (3%) Query: 2 ILQVQDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPAQGQVLF 61 +L+V+++ YG +G+S++V GE V ++G NGAGK++ LK+I GVV PA G + Sbjct: 5 LLKVENLCVNYGHIEAARGISIEVGEGEFVGMIGSNGAGKSSALKAIAGVVKPASGSITL 64 Query: 62 EGKVISGLPSYQIAARGVCLVPEHRGIFKLLTVEENLTMA----ARKESAWGLEE----I 113 GK + GL S+++ +GV LVPE R +F +VE+NL + A++ L + + Sbjct: 65 GGKPVQGLASHEMVHQGVALVPEGRFVFADQSVEDNLILGGFVQAQRSGVAALRDDIDRM 124 Query: 114 YAIFPRLKERRKNGGGQLSGGEQQMLAIARALMTHPHVLMLDEPVEGLAPVIVDEIVAQI 173 + +FPRLKERR G LSGGEQQML IAR LM+HP +L++DE GLAP I+D + + Sbjct: 125 FQLFPRLKERRTQQAGSLSGGEQQMLVIARGLMSHPRLLLIDEVSLGLAPKILDFLFPVL 184 Query: 174 KQIKSTGMSIILVEQNLEVCTQLADRHYIVEQGRIVYSGSNAQFLADEGVKDRYLG 229 + G+SI+LVEQ + R Y++E G + SG ++ + D V + YLG Sbjct: 185 VDLNRQGLSILLVEQIATRALAVTSRAYVMENGNVKISGRSSDLVKDAAVMEAYLG 240 >gi|134096407|ref|YP_001101482.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 173 bits (438), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 86/232 (37%), Positives = 143/232 (61%), Gaps = 5/232 (2%) Query: 3 LQVQDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPAQGQVLFE 62 L V+ + Y K ++L VS++V G++ +LG NGAGK+T ++SI+G+ PP QG++L+ Sbjct: 4 LSVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILWN 63 Query: 63 GKVISGLPSYQIAARGVCLVPEHRGIFKLLTVEENLTMAARKESAWG-----LEEIYAIF 117 G+ ++G ++ I A G+ +PE R +F ++V ENL + A + L +Y IF Sbjct: 64 GRNLAGEKTHAIIASGISCIPEGRKVFPRMSVAENLALGAFLVTNSAVVRERLARVYEIF 123 Query: 118 PRLKERRKNGGGQLSGGEQQMLAIARALMTHPHVLMLDEPVEGLAPVIVDEIVAQIKQIK 177 PRLKER G +SGGEQ M++I R LM P +L++DEP GL+P+ V E I++I Sbjct: 124 PRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPQLLVIDEPSLGLSPLYVKENFNVIRRIN 183 Query: 178 STGMSIILVEQNLEVCTQLADRHYIVEQGRIVYSGSNAQFLADEGVKDRYLG 229 + G++++LVEQN ++ Y++ QGR++ G+ + +++ V+ Y G Sbjct: 184 ALGITVLLVEQNARQTLAISHYGYVLSQGRVMAEGTAEELASNDDVRAAYFG 235 >gi|134093662|ref|YP_001098737.1| branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 145 bits (365), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 139/225 (61%), Gaps = 5/225 (2%) Query: 1 MILQVQDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPAQGQVL 60 M L +++V+ + +L+ +S+ ++ GE+V L+GRNGAGK+TT +SI+G P G + Sbjct: 1 MSLALENVNVILAGNPVLRDISMHIEPGELVCLVGRNGAGKSTTFRSIMGFQPLKSGAIK 60 Query: 61 FEGKVISGLPSYQIAARGVCLVPEHRGIFKLLTVEENL-----TMAARKESAWGLEEIYA 115 ++ I+G+ +++I G+ PE +F LTVE+N+ T + + + ++E YA Sbjct: 61 WKRSAINGMQTHKIVELGLGYTPEGSDVFGDLTVEDNIALPTWTRKSGRSAQERIDEAYA 120 Query: 116 IFPRLKERRKNGGGQLSGGEQQMLAIARALMTHPHVLMLDEPVEGLAPVIVDEIVAQIKQ 175 +FP+LK+ GG QLSGGE++M++IARAL P +L+LDE EGL+P I+ I ++ Sbjct: 121 VFPKLKQYLHRGGQQLSGGERKMVSIARALALDPELLLLDEAFEGLSPAIIPTISEGLQS 180 Query: 176 IKSTGMSIILVEQNLEVCTQLADRHYIVEQGRIVYSGSNAQFLAD 220 I G ++L E N ADR Y++E+G IV+ G+ AQ AD Sbjct: 181 ILKQGRGVLLAESNFYHLPPFADRLYVIERGEIVFEGTLAQAEAD 225 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 144 bits (364), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 83/238 (34%), Positives = 137/238 (57%), Gaps = 12/238 (5%) Query: 3 LQVQDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPAQGQVLFE 62 L V + YG +++ V+LQV++GEV+ LLG NGAGKTT+ IVG+VP G++ + Sbjct: 5 LIVSGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRIELD 64 Query: 63 GKVISGLPSYQIAARGVCLVPEHRGIFKLLTVEENLTMAARKESAWG-----------LE 111 G IS P ++ A G+ +P+ +F+ L+VE+N+ + G L+ Sbjct: 65 GVDISRQPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKALSKEQIEQRLD 124 Query: 112 EIYAIFPRLKERRKNGGGQLSGGEQQMLAIARALMTHPHVLMLDEPVEGLAPVIVDEIVA 171 + A ++++ R+N LSGGE++ + IARAL T+P ++LDEP G+ P+ V EI Sbjct: 125 TLLADL-QIEKLRENQALSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIEIQR 183 Query: 172 QIKQIKSTGMSIILVEQNLEVCTQLADRHYIVEQGRIVYSGSNAQFLADEGVKDRYLG 229 ++ +K G+ +++ + N+ + DR YI+ QG ++ SG +ADE V+ YLG Sbjct: 184 IVRFLKERGIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDIIADESVRRVYLG 241 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 441,898 Number of extensions: 17955 Number of successful extensions: 205 Number of sequences better than 1.0e-08: 40 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 42 Length of query: 234 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 155 Effective length of database: 740,042 Effective search space: 114706510 Effective search space used: 114706510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)