BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4534.p (255 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 150 5e-38 gi|134095637|ref|YP_001100712.1| high-affinity branched-chain am... 150 7e-38 gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 135 3e-33 gi|134093663|ref|YP_001098738.1| putative branched-chain amino a... 128 3e-31 gi|134096408|ref|YP_001101483.1| high-affinity branched-chain am... 118 3e-28 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 150 bits (380), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 94/256 (36%), Positives = 144/256 (56%), Gaps = 9/256 (3%) Query: 6 LQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSILVE 65 LQ ++T +G A + ++ ++AGTVHSVIGPNGAGK+T + ++G T GSI Sbjct: 348 LQTKDMTMAFGGLIANDKVSEVLKAGTVHSVIGPNGAGKSTFINCVSGFYRPTSGSIEFM 407 Query: 66 GEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGR------APLAALNPWKR 119 G+ ++ + GLAR+FQ T LF +++ EN+ + A R A L L + Sbjct: 408 GQIATAKQSHQLARMGLARTFQNTELFGDMTCLENVLVGADSRYRSGLFATLLRLPSYFH 467 Query: 120 AEQFTSACALADELLVRLSLQAVAGRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSG 179 E+ A A LL + L A L G QRRLE+ A+A PK++ LDEP +G Sbjct: 468 DER--RYAAEARCLLEYVGLDDYAEEKARNLPFGHQRRLEIARALAMSPKLLLLDEPAAG 525 Query: 180 MGIDDIAEMKQLIHGL-RRDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSD 238 + +I ++ +LI L TV+L+EH++D++M +SD +TV+ G+++A G AE+RS+ Sbjct: 526 LTHGEIEDLMKLIRNLASHQITVLLVEHHVDMIMAVSDHVTVLDYGKVIASGTVAEVRSN 585 Query: 239 ERVRRAYLGSMITGGK 254 V AY G+ T G Sbjct: 586 PAVIEAYFGTGETKGN 601 >gi|134095637|ref|YP_001100712.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 260 Score = 150 bits (378), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 89/248 (35%), Positives = 143/248 (57%), Gaps = 5/248 (2%) Query: 5 ILQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSILV 64 IL NV+KR+G A+ + + I G ++ +IGPNGAGKTT F+ +TG GS + Sbjct: 10 ILNIANVSKRFGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGSFEL 69 Query: 65 EGEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGRAP---LAALNPWKRAE 121 G+ + + + G+AR+FQ LF ++ EN+ + R A+ K A Sbjct: 70 AGKAYSPSAPHLVAKAGIARTFQNIRLFGEMTALENVMVGRHVRTHQGLFGAVFHHKAAR 129 Query: 122 QFTSAC-ALADELLVRLSLQAVAGRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGM 180 Q +A A A ELL + + AGR LS+G QRRLE+ A+A P+++ LDEP +GM Sbjct: 130 QEEAAIRARAMELLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGM 189 Query: 181 GIDDIAEMKQLIHGLRRD-YTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSDE 239 + +++L+ ++ + T++LIEH++ +VM + DRITV+ G+ +A+G PA+++ + Sbjct: 190 NATEKLGLRELLVKIKAEGKTILLIEHDVKLVMGLCDRITVLDYGKPIAEGVPADVQKNP 249 Query: 240 RVRRAYLG 247 V AYLG Sbjct: 250 AVIEAYLG 257 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 135 bits (339), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 80/239 (33%), Positives = 134/239 (56%), Gaps = 9/239 (3%) Query: 11 VTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSILVEGEEVA 70 + K YG V + L +E+G V ++GPNGAGKTT F+ + G P G I ++G +++ Sbjct: 10 LQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRIELDGVDIS 69 Query: 71 HLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQ-GRAPLAALNPWKRAEQFTSACAL 129 P ++R Q GL+ Q S+F LSV +N+R + R AL+ + ++ Sbjct: 70 RQPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKALSKEQIEQRL------ 123 Query: 130 ADELLVRLSLQAVAGRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGMGIDDIAEMK 189 D LL L ++ + LS G++RR+E+ A+A P+ + LDEP +G+ + E++ Sbjct: 124 -DTLLADLQIEKLRENQALSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIEIQ 182 Query: 190 QLIHGLR-RDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSDERVRRAYLG 247 +++ L+ R V++ +HN+ + I DR ++ G +LA G+P +I +DE VRR YLG Sbjct: 183 RIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDIIADESVRRVYLG 241 >gi|134093663|ref|YP_001098738.1| putative branched-chain amino acid ABC transporter, ATP-binding protein [Herminiimonas arsenicoxydans] Length = 255 Score = 128 bits (322), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 135/252 (53%), Gaps = 16/252 (6%) Query: 5 ILQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSILV 64 +LQA +++ YG F A++ + L + G SV+GPNGAGKTTL + LTG T G++ Sbjct: 7 LLQAQQISRHYGDFIALHNVDLSVSRGEFVSVVGPNGAGKTTLVNVLTGLHQPTTGNVHF 66 Query: 65 EGEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGRAPLAALNPWKRAEQFT 124 G +A + +GLAR+FQ+TS+FP L+VRE + ++A + LN R F Sbjct: 67 NGSNIAGVGAVDLATRGLARAFQLTSIFPELTVRETIAVSA-----CSYLN--MRWNGFG 119 Query: 125 S--ACALADELLVR----LSLQAVAGRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTS 178 S ++++VR L + L HG+++ L+V A A PKV+ LDEPT+ Sbjct: 120 SLFGSRKVNDIVVRTADAFGLAPWLDTKGSSLPHGRRKLLDVASAFALHPKVMLLDEPTA 179 Query: 179 GMGI-DDIAEMKQLIHGLRR--DYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEI 235 G+ D M+ L+ + ++L+EH+MD+V S RI MQ G+ +A E Sbjct: 180 GVSTADKHGVMETLLRAAKHMGIEAIMLVEHDMDLVSRYSTRIIAMQAGKKIADLPRDEF 239 Query: 236 RSDERVRRAYLG 247 ++E + +G Sbjct: 240 FANEEIISIVVG 251 >gi|134096408|ref|YP_001101483.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 276 Score = 118 bits (295), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 87/256 (33%), Positives = 138/256 (53%), Gaps = 17/256 (6%) Query: 5 ILQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSILV 64 ++ A ++T R+G TA++ + L I G V ++GPNG+GKTT F+ LTG + GSI+ Sbjct: 22 LVSARDLTMRFGGLTALDQLNLHIVEGEVLGLLGPNGSGKTTFFNVLTGLYKASSGSIIY 81 Query: 65 EGEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLA-AQGRAPLAALNPWKRA--- 120 +G EV + G+AR+FQ + L L+V +N+ + Q N ++R Sbjct: 82 QGREVIGQTPQEIYRSGVARTFQRSRLSLPLTVFDNIVIGDYQHMQHGLFFNLFRRKAFR 141 Query: 121 EQFTSACALADELLVRLS--LQAVAGRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTS 178 ++ + A + LL S L A S +RR+EV A+ P+++ LDEP++ Sbjct: 142 AEYDAYVAKVEALLHIFSPPLVARMFEPVETFSMIDRRRIEVCRALLSEPRLLLLDEPSA 201 Query: 179 GMG-------IDDIAEMKQLIHGLRRDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGK 231 GM +DDI +++ + L TVVLIEH M+++ I+DR V G+ +A+G Sbjct: 202 GMTHDETEALMDDILQVRNKLSNL----TVVLIEHEMNVIKRITDRCIVFNYGKKIAEGT 257 Query: 232 PAEIRSDERVRRAYLG 247 AEI +D V+ AYLG Sbjct: 258 YAEITADPNVQTAYLG 273 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 444,712 Number of extensions: 16843 Number of successful extensions: 209 Number of sequences better than 1.0e-08: 40 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 42 Length of query: 255 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 175 Effective length of database: 736,747 Effective search space: 128930725 Effective search space used: 128930725 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)