BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4528.p (472 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094028|ref|YP_001099103.1| bifunctional transcriptional re... 308 3e-85 gi|134095984|ref|YP_001101059.1| transcription regulator GntR [H... 140 2e-34 gi|134094032|ref|YP_001099107.1| putative aminotransferase [Herm... 123 2e-29 gi|134093921|ref|YP_001098996.1| MocR family transcriptional reg... 109 3e-25 >gi|134094028|ref|YP_001099103.1| bifunctional transcriptional regulator/amino transferase [Herminiimonas arsenicoxydans] Length = 486 Score = 308 bits (790), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 184/463 (39%), Positives = 262/463 (56%), Gaps = 12/463 (2%) Query: 13 LQRNTSARLVEQVADGLAGLIEAGELRSGERLPSVRQFAHSHAIGASTVVEAYEQLVARG 72 L R T L+ Q+ + I+ LR+G R+PS+RQF+ H + TVVEAY++LVA G Sbjct: 23 LSRETGGSLIAQIVQLVTARIDDKLLRTGARMPSIRQFSDQHKVSRFTVVEAYDRLVAGG 82 Query: 73 MLLARRGAGFFVAARAGQSGPRA--VFVPPEPVIDSAWLLSEMFADERVPIKAGCGWLPG 130 +L +RRG+GF+V R PRA +PV D WL+ MF G G LP Sbjct: 83 LLESRRGSGFYVRDRTPMLAPRAQRTNTARQPV-DVVWLVRNMFRQLPPQKMPGVGLLPN 141 Query: 131 KWLNDEGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQLITQFLGHWSLELGIEQVLTTHG 190 +WL+ + + A R + R Q YG+P G+ PLRQ + L + +Q +TT G Sbjct: 142 EWLDADLVANALRAVSRQNLPLQ--YGNPQGFLPLRQQLQLKLAELEISATPDQFVTTLG 199 Query: 191 ATQALDLVIRTMTQPGDTVLIDDPGYCNLIAMLRLAALNVIGVPRTPGGVDTDVLETLAR 250 TQALDLV R QPGDT+ +DDP + + + V+G+PR P G D L LA Sbjct: 200 VTQALDLVARHYIQPGDTIFVDDPAWFLMFGSFAMLGAKVVGIPRLPDGPDIAQLAELAA 259 Query: 251 THRPKMFFTTSVLQNPTGTSYTPACAMRVLQAAERHGFWVVEDDIFREL--GQATDPM-- 306 HRPK+F SVL NPT TS + A A +VL+ AE++ F +VEDDI+ ++ G P Sbjct: 260 LHRPKLFVINSVLHNPTSTSLSAAKAFQVLKIAEQYDFMIVEDDIYCDMHPGTTVQPATR 319 Query: 307 LAALDGLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLTLTNSEINERLVHN 366 +AALD L RVIY+G +SKT+A +LRVG+IA E+A+ + KM+ TLT +EI ER+V+ Sbjct: 320 IAALDQLNRVIYLGGFSKTLAANLRVGFIATSPEIAKHLCDRKMLTTLTTTEITERVVYR 379 Query: 367 VLTEGHHRRHVQTLNATLLNAQATLNAKLTEVGLTPFTAARGGMFSWATIEGCELSAREI 426 +L+EGH+R+H L L + ++ +G+ + GMF W + GC+ +A + Sbjct: 380 ILSEGHYRKHADRLRNKLDAVRDKTVRQMERIGIKINISTPAGMFVWTDV-GCDSNA--L 436 Query: 427 ADRARQKGIWLAPGDFFHLSAPHKTSFRFNVGYADVPELFDFL 469 +RA ++G LAPG F + T+ RFNV P + FL Sbjct: 437 TERAMEQGYLLAPGSLFSPNQLPSTNMRFNVAAMADPGILPFL 479 >gi|134095984|ref|YP_001101059.1| transcription regulator GntR [Herminiimonas arsenicoxydans] Length = 470 Score = 140 bits (353), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 134/468 (28%), Positives = 210/468 (44%), Gaps = 45/468 (9%) Query: 20 RLVEQVADGLAGLIEAGELRSGERLPSVRQFAHSHAIGASTVVEAYEQLVARGMLLARRG 79 +L E +A +A I+ G LR G+RLPSVRQ + S + STV +AY L ARG++ AR Sbjct: 2 KLYETLAADIALSIQEGVLRLGDRLPSVRQASASRDVSPSTVFQAYYLLEARGLIRARER 61 Query: 80 AGFFVAARAGQSGPRAVFVPPEP-----------VIDSAWLLSEMFADER----VPIKAG 124 +G++V + +PPEP +D + L+ E+ + VP+ + Sbjct: 62 SGYYVVGDVRK-------LPPEPEQASQPDEDSSPVDISELVFEVLESSKMRDVVPLGSA 114 Query: 125 CGWLPGKWLND-----EGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQLITQFLGHWSLE 179 P L + + + +++ + G+P LR+ I L Sbjct: 115 ---FPSPLLFPLARLAKAMASSVQQLDPWSTVDDLTPGNPQ----LRRQIALRYRADGLH 167 Query: 180 LGIEQVLTTHGATQALDLVIRTMTQPGDTVLIDDPGYCNLIAMLRLAALNVIGVPRTP-G 238 + ++++ T+GA AL+L + +T+PGD VL++ P + + L L I VP P Sbjct: 168 VQPDEIVITNGALDALNLCLIAVTRPGDAVLVESPTFYAALQSLERNGLQAIEVPTHPRE 227 Query: 239 GVDTDVLETLARTHRPKMFFTTSVLQNPTGTSYTPACAMRVLQA-AERHGFWVVEDDIFR 297 G+D L + H+PK + + QNP G S P R L A +H ++EDD++ Sbjct: 228 GMDLAALARVLERHQPKACWLMTNFQNPLG-SLMPDEKKRDLVALLSQHDIPLIEDDVYG 286 Query: 298 EL--GQATDPMLAALDGLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLTLT 355 EL G A D V++ S+SK +AP RVG+ A R R + K+ TL Sbjct: 287 ELYFGDKRPAPAKAYDTKGLVMHCSSFSKCLAPGYRVGWAAPGR-YTRAVARHKLTTTLA 345 Query: 356 NSEINERLVHNVLTEGHHRRHVQTLNATLLNAQATLNAKLTEVGLTPFTAA---RGGMFS 412 S + + L +G + RH++ L TL Q + P T A RGG F Sbjct: 346 ASAPAQAALATYLEKGGYDRHLRQLRHTLALQQTQFMEAIARY-FPPGTQATRPRGGYFL 404 Query: 413 WATIEGCELSAREIADRARQKGIWLAPGDFFHLSAPHKTSFRFNVGYA 460 W + ++A + +A GI +APG F R N G+A Sbjct: 405 WVELPHA-VNALTLHRQALSHGISIAPGPIFSAHQGFTNCIRLNYGHA 451 >gi|134094032|ref|YP_001099107.1| putative aminotransferase [Herminiimonas arsenicoxydans] Length = 397 Score = 123 bits (308), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/332 (24%), Positives = 152/332 (45%), Gaps = 10/332 (3%) Query: 136 EGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQLITQFLGHWSLELGIEQVLTTHGATQAL 195 E + A ++ G + YG GYAPLR+ I L + + +QVL G+ QAL Sbjct: 53 EHMKAAFDTVLSQQGKIALQYGPSDGYAPLREWIADSLSIPGVTITPDQVLMVSGSQQAL 112 Query: 196 DLVIRTMTQPGDTVLIDDPGYCNLIAMLRLAALNVIGVPRTPGGVDTDVLETLARTHRPK 255 DL+ + + + VL++ P Y + + + +P G+ + + +A R Sbjct: 113 DLLGKVLIEEHSKVLVETPSYLGALQAFSVYQPEFVSIPTDDFGLLPEEVAKIADGAR-- 170 Query: 256 MFFTTSVLQNPTGTSYTPACAMRVLQAAERHGFWVVEDDIFRELGQATDPMLAALD-GLQ 314 + + QNPTG + + +++ R G ++EDD + L +P+ L Sbjct: 171 LLYALPNFQNPTGRTMSVERRFALVETCARLGLPLIEDDPYGALSYRGEPLPKMLTMNPN 230 Query: 315 RVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLTLTNSEINERLVHNVLTEGHHR 374 VIY+GS+SK + P +R+GY+ L R++ K L S++ + +V+ + +G Sbjct: 231 GVIYLGSFSKVLTPGIRLGYVVAPVPLVRKLEQAKQAADLHTSQLTQMVVYEAIKDGFLE 290 Query: 375 RHVQTLNATLLNAQATLNAKLTE---VGLTPFTAARGGMFSWATIEGCELSAREIADRAR 431 +H+ ++ N + LTE G+T + GGMF W T+ + ++ + + Sbjct: 291 KHIPSIRTLYANQCQVMLDALTEFFPAGVT-WNKPEGGMFIWVTLPE-HIDCMKLLEESI 348 Query: 432 QKGIWLAPGDFFHLSAPHKTSFRFNVGYADVP 463 + + PG F+ + P K + R + + VP Sbjct: 349 TQNVAFVPGAPFYANEPQKNTLRLS--FVTVP 378 >gi|134093921|ref|YP_001098996.1| MocR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 469 Score = 109 bits (273), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 111/388 (28%), Positives = 179/388 (46%), Gaps = 19/388 (4%) Query: 9 LQLDLQRNTSARLVEQVADGLAGLIEAGELRSGERLPSVRQFAHSHAIGASTVVEAYEQL 68 L++ L R L EQ+ + IE+G L G RLPS + A + TV AYE+L Sbjct: 5 LKIQLDRTAKLSLSEQICVSICRAIESGLLAPGTRLPSWQGLAAQLGVARGTVQAAYERL 64 Query: 69 VARGMLLARRGAGFFVAARAGQSGPRAVFVPPEPVIDSAWLLS--EMFADERVPIKAGCG 126 M+ G VA R + + PE A++ + EM A + + G Sbjct: 65 SDSQMIETFGAKGTRVAPRLHTTAGK-----PEAPQPGAFMKTYQEMMAGPAI-FQLGIP 118 Query: 127 WLPGKWLNDEGLHQA-ERRIIRSPGAQQVGYGHPYGYAPLRQLITQFLG-HWSLELGIEQ 184 + G D+ +A ++++ + Y P G LR+ + +L +L EQ Sbjct: 119 AMEG--FPDKLFARARSSNLLKTGSFSSLVYPDPRGEIELRKEVAGYLSISRNLHCFPEQ 176 Query: 185 VLTTHGATQALDLVIRTMTQPGDTVLIDDPGYCNLIAMLRLAALNVIGVPRTPGGVDTDV 244 V T G + L LV+R + G V +++PG+ L LA LN++ VP G+D D Sbjct: 177 VFITSGYSSGLGLVLRVLGLDGRKVWMEEPGFLLTRKGLELARLNIVPVPVDAEGLDVDY 236 Query: 245 LETLARTHRPKMFFTTSVLQNPTGTSYTPACAMRVLQAAERHGFWVVEDDIFREL---GQ 301 + + T Q P GT+ + +++L+ A + W++EDD EL G+ Sbjct: 237 --GIKNAADAALAVVTPGQQAPLGTTLSLRRRLQLLEWAAANNAWIIEDDYLSELQLEGR 294 Query: 302 ATDPMLAALDGLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLTLTNSEINE 361 P LA+LD +RVI++GS+SKTI+P LR+G++ ELA L S + + Sbjct: 295 PA-PALASLDEGKRVIHIGSFSKTISPGLRLGFVVVPVELAEAFSEIVATLAPAPSPVIQ 353 Query: 362 RLVHNVLTEGHHRRHVQTLNATLLNAQA 389 + +GH+ + V+ L L +AQ+ Sbjct: 354 LATAQFMHDGHYIQRVRRLK-RLYSAQS 380 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.137 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 899,226 Number of extensions: 35995 Number of successful extensions: 127 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 115 Number of HSP's successfully gapped: 5 Length of query: 472 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 387 Effective length of database: 720,272 Effective search space: 278745264 Effective search space used: 278745264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)