BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4526.p (315 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095507|ref|YP_001100582.1| putative transcriptional regula... 178 3e-46 gi|134094015|ref|YP_001099090.1| LysR family transcriptional reg... 173 1e-44 gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herm... 130 6e-32 gi|134093609|ref|YP_001098684.1| putative transcriptional regula... 127 9e-31 gi|134094407|ref|YP_001099482.1| transcriptional regulator [Herm... 109 1e-25 >gi|134095507|ref|YP_001100582.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 287 Score = 178 bits (452), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 101/288 (35%), Positives = 164/288 (56%), Gaps = 5/288 (1%) Query: 15 TFVQVVEAGSFSEAARQQGMTPSAVSRQVARLEKMMGVSLFQRTTRQLRLTDAGLDVLEH 74 TFV VVEA SF+ A + ++ + VS+ V LE +G L RTTR+L LT++GL E Sbjct: 3 TFVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLTESGLAYYER 62 Query: 75 GRKMVSAARATLLAAEGHAGTPKGLVRMSAPKAFARRILQPVLLEFLKCYPEVDVHLLVV 134 ++++ A A P+G ++++ P +F + P+L E+++ YPEV + + + Sbjct: 63 CLQILADVDEAEQVAAQSAAMPRGTLKVAMPVSFGTVRIAPLLTEYMRRYPEVRLDIALA 122 Query: 135 DRPVDPLREGVDLVIRLTDVPPQGMVARPLLPVRQLVLASPEYLAVHGAINHPEDLMSHS 194 DR VD + +G DL IR+ ++P G++AR L R ++ ASP YL VHGA PEDL H+ Sbjct: 123 DRRVDLIEDGYDLAIRVGNLPESGLIARKLATDRIVLCASPAYLQVHGAPQTPEDLKQHA 182 Query: 195 CLTLGEEERDNRWRFVSGTESAEIIVAGRCAVNHSEM-RLAAIEAGIGVGCVPDFVANEA 253 CL + W F G A + V G N+ +M RLAA++ G G+ P F+ + Sbjct: 183 CLNYSYSSSGDEWVFGKGKTRAAVRVDGPMRANNGDMLRLAALD-GAGLIWQPHFIVADD 241 Query: 254 VAAGRVVRLLPEWNFDINYQGMAYLLFPASRYIAPKMRVLIDYLVGAL 301 V AGR+V L+ + + + + Y ++P+ ++++ K+R +DYLV + Sbjct: 242 VQAGRLVELMKD---ESDTELGIYAIYPSRKHLSAKVRTFVDYLVACM 286 >gi|134094015|ref|YP_001099090.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 305 Score = 173 bits (438), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 103/303 (33%), Positives = 162/303 (53%), Gaps = 4/303 (1%) Query: 7 VDVLHELVTFVQVVEAGSFSEAARQQGMTPSAVSRQVARLEKMMGVSLFQRTTRQLRLTD 66 +D + +L F +V+ GS + AA++ G+TP +VS+++A +E + V L RTTR++ LT Sbjct: 1 MDGISDLAFFALLVKRGSLAAAAQELGVTPPSVSKRLAGIEARLRVRLLNRTTRRISLTP 60 Query: 67 AGLDVLEHGRKMVSAARATLLAAEGHAGTPKGLVRMSAPKAFARRILQPVLLEFLKCYPE 126 G L G ++V+ A G T KGL+++SA F RR + P L F + YPE Sbjct: 61 EGEIYLADGARLVAELEALEQRISGGNVTAKGLLKISATFGFGRRHITPQLSAFARLYPE 120 Query: 127 VDVHLLVVDRPVDPLREGVDLVIRLTDVPPQGMVARPLLPVRQLVLASPEYLAVHGAINH 186 VDV L + DRPV+ + +G D IR +P + AR + R+LV ASP YL HG Sbjct: 121 VDVQLHLTDRPVNLVEQGFDADIRFGQLPDARLTARKIADNRRLVCASPAYLKNHGIPLT 180 Query: 187 PEDLMSHSCLTLGE-EERDNRWRFVSGTESAEIIVAGRCAVNHSEMRLAAIEAGIGVGCV 245 P DL H+C+ L E +E W F SGT+ + V G + N E A G G+ Sbjct: 181 PRDLQKHNCILLRESDEIYGSWHFSSGTKQETVKVRGSLSANDGECATAWALDGQGIVVR 240 Query: 246 PDFVANEAVAAGRVVRLLPEWNFDINYQGMAYLLFPASRYIAPKMRVLIDYLVGALQSQV 305 ++ + +GR+ +L +W Q Y++FP +++ K R L+D+++ A +S Sbjct: 241 SEWDVAPYLRSGRLRTVLEDWQLP---QADIYIVFPTKNHLSAKTRALVDFMLQAFESHR 297 Query: 306 AEK 308 ++ Sbjct: 298 TDR 300 >gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 293 Score = 130 bits (328), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 84/286 (29%), Positives = 141/286 (49%), Gaps = 3/286 (1%) Query: 12 ELVTFVQVVEAGSFSEAARQQGMTPSAVSRQVARLEKMMGVSLFQRTTRQLRLTDAGLDV 71 +L TFV V+++G+ AA+ G T SAVSR ++RLE+ + SL RTTR++ LTD G Sbjct: 7 DLKTFVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELTDEGRLF 66 Query: 72 LEHGRKMVSAARATLLAAEGHAGTPKGLVRMSAPKAFARRILQPVLLEFLKCYPEVDVHL 131 L+ R +++A A P G +R+ A F + P + EF YP++ + L Sbjct: 67 LKKARAILAAMDEAEEAIRVRRQQPSGRLRIDAAAPFILHAIVPHVAEFRALYPQITLEL 126 Query: 132 LVVDRPVDPLREGVDLVIRLTDVPPQGMVARPLLPVRQLVLASPEYLAVHGAINHPEDLM 191 D+ D L D+ IR+ ++ + AR L +LASP+YL HG PE L Sbjct: 127 TSNDQVADLLEHRTDIAIRIGNLQDSTLHARALTANPLHLLASPDYLQRHGMPTTPEQLA 186 Query: 192 SHSCLTLGEEERDNRWRFVSGTESAEIIVAGRCAVNHSEMRLAAIEAGIGVGCVPDFVAN 251 H L + E N W + A + +R A+ G G+ + D++ Sbjct: 187 GHQLLGFLQFESGNTWPIRHAGGEGLTVTPALFASSGETLRALALH-GQGIASLADYMTR 245 Query: 252 EAVAAGRVVRLLPEWNFDINYQGMAYLLFPASRYIAPKMRVLIDYL 297 + +AAGR+VR+L N+ Y+ + ++ + ++ ++ +++L Sbjct: 246 DDIAAGRLVRILE--NYYTGYRQQIHAVYYRNTQLSRRISCFLEFL 289 >gi|134093609|ref|YP_001098684.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 127 bits (318), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 93/296 (31%), Positives = 147/296 (49%), Gaps = 12/296 (4%) Query: 7 VDVLHELVTFVQVVEAGSFSEAARQQGMTPSAVSRQVARLEKMMGVSLFQRTTRQLRLTD 66 +D L ++ FV VE SF+ AA +TP V R++ LEK +GV L R+TR+L LT+ Sbjct: 1 MDKLKQIEAFVMAVEHSSFAAAALALQVTPVMVGRRIDALEKRLGVRLLHRSTRRLALTE 60 Query: 67 AGLDVLEHGRKMVS---AARATLLAAEGHAGTPKGLVRMSAPKAFARRILQPVLLEFLKC 123 G LEH RKM+S A +TL A GH L+ +SAP +F R+ + P FL+ Sbjct: 61 EGSVYLEHCRKMLSELDQAESTLSA--GHNKVSGHLI-ISAPASFGRQHVAPYAQNFLEQ 117 Query: 124 YPEVDVHLLVVDRPVDPLREGVDLVIRLTDVPPQGMVARPLLPVRQLVLASPEYLAVHGA 183 +P + + + DR VD ++EG D+ IR+ VA L +++V +P+Y HG Sbjct: 118 HPGLKMSFNLTDRVVDLVQEGYDMGIRIGGTIDPNFVAIKLAANKRVVCGTPDYFKKHGK 177 Query: 184 INHPEDLMSHSCLTLGEEERDNR-WRFVSGTESAEIIVAGRCAVNHSEMRLAAIEAGIGV 242 +DL H+CL + R W F ++ + G N E+ + G+G+ Sbjct: 178 PKTLDDLAKHNCLAFNLQGGQQRGWYFNHRGKTVSVRAQGSLDCNDGELLHRWMSEGLGI 237 Query: 243 GCVPDFVANEAVAAGRVVRLLPEWNFDI-NYQGMAYLLFPASRYIAPKMRVLIDYL 297 + + +G + +L + F I Y MA ++P R + K+R+ I +L Sbjct: 238 AWRSVWEIQSQLESGTLETVLDD--FAIPEYDIMA--VYPQQRNVPAKVRLFISHL 289 >gi|134094407|ref|YP_001099482.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 304 Score = 109 bits (273), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 83/302 (27%), Positives = 147/302 (48%), Gaps = 10/302 (3%) Query: 6 LVDVLHELVTFVQVVEAGSFSEAARQQGMTPSAVSRQVARLEKMMGVSLFQRTTRQLRLT 65 +++ L L F +A SF EAA + G +P A++R V LE+ +G LF R TR +++T Sbjct: 1 MLNRLEMLRLFCAAADASSFKEAAARLGTSPQAITRAVKELEEAVGELLFHRNTRGIQIT 60 Query: 66 DAGLDVLEHGRKMVSAARATLLAAEGHAGTP-KGLVRMSAPKAFARRILQPVLLEFLKCY 124 + G + EH R+MV+ + T +GLVR++AP RR L +LL ++ Y Sbjct: 61 EFGTQLAEHAREMVTGVDKLFHHTNPLSDTNLEGLVRITAPSPIGRRHLLKLLLPLIRQY 120 Query: 125 PEVDVHLLVVDRPVDPLREGVDLVIRLTDVPPQGMVARPLLPVRQLVLASPEYLAVHGAI 184 P + + L V + D + + +D+ +R+ + +VAR + V V+A+PE +A G Sbjct: 121 PGIKLELGVTNLLADVVDKKIDIGVRIGPLRDSRLVARSVGKVSFFVVATPELVATRGKP 180 Query: 185 NHPEDLMSHSCLTLGEEERDNRWRFVSGTESAEIIVAGRCAVNHSEMRLAAIEAGIGVGC 244 P+DL+ L + W + + + + E+ A+ AGIG G Sbjct: 181 ITPQDLLGLPTTALMDGNTGRIWPWYFADSQPLTLTSPTLVSDDPEVECDAVLAGIGYGQ 240 Query: 245 VPDFVANEAVAAGRVVRLLPEWNFDINYQGMAYLLF---PASRYIAPKMRVLIDYLVGAL 301 + + A + +GR+V +L +YQ + + L+ P + ++R++ D +V L Sbjct: 241 LSNHQAEPHIRSGRLVTVLD------DYQPVPWDLYVYRPQRGPVPARIRLVFDRIVEIL 294 Query: 302 QS 303 Sbjct: 295 SD 296 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 580,732 Number of extensions: 23873 Number of successful extensions: 125 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 115 Number of HSP's successfully gapped: 12 Length of query: 315 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 233 Effective length of database: 730,157 Effective search space: 170126581 Effective search space used: 170126581 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)