BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4515.p (235 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096407|ref|YP_001101482.1| high-affinity branched-chain am... 138 3e-34 gi|134095847|ref|YP_001100922.1| high-affinity branched-chain am... 132 2e-32 gi|134095636|ref|YP_001100711.1| high-affinity branched-chain am... 126 1e-30 gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 114 4e-27 gi|134093662|ref|YP_001098737.1| branched-chain amino acid ABC t... 113 7e-27 >gi|134096407|ref|YP_001101482.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 138 bits (347), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 131/233 (56%), Gaps = 8/233 (3%) Query: 4 SALVMKDITSGYRASVVLRGLSLEIAQGEAVALLGKNGMGKSTLLKTVMGYLGKQSGAVH 63 S L +K +T+GY VL +S+E+A G+ +LG NG GKSTL+++++G + G + Sbjct: 2 SNLSVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEIL 61 Query: 64 LHGSNITRMSPHRIARLGVAYAAQENALFAELSIADNLRLG---LTRPALFEERFAAIEG 120 +G N+ H I G++ + +F +S+A+NL LG +T A+ ER A + Sbjct: 62 WNGRNLAGEKTHAIIASGISCIPEGRKVFPRMSVAENLALGAFLVTNSAVVRERLARVYE 121 Query: 121 LFPVFRSRLQQYAGTLSGGEQKMLLLARALMMRPALILLDEITEGLQPSVIDRLAHALLE 180 +FP + R Q AGT+SGGEQ M+ + R LM P L+++DE + GL P + + + Sbjct: 122 IFPRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPQLLVIDEPSLGLSPLYVKENFNVI-- 179 Query: 181 ERRQH--GTTLLLVEQNVPFALQVADRYLILKQGELVEEGDAKHAGATETVFA 231 RR + G T+LLVEQN L ++ +L QG ++ EG A+ + + V A Sbjct: 180 -RRINALGITVLLVEQNARQTLAISHYGYVLSQGRVMAEGTAEELASNDDVRA 231 >gi|134095847|ref|YP_001100922.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 243 Score = 132 bits (332), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 124/220 (56%), Gaps = 7/220 (3%) Query: 1 MKQSALVMKDITSGYRASVVLRGLSLEIAQGEAVALLGKNGMGKSTLLKTVMGYLGKQSG 60 M L ++++ Y RG+S+E+ +GE V ++G NG GKS+ LK + G + SG Sbjct: 1 MSAPLLKVENLCVNYGHIEAARGISIEVGEGEFVGMIGSNGAGKSSALKAIAGVVKPASG 60 Query: 61 AVHLHGSNITRMSPHRIARLGVAYAAQENALFAELSIADNLRLG------LTRPALFEER 114 ++ L G + ++ H + GVA + +FA+ S+ DNL LG + A + Sbjct: 61 SITLGGKPVQGLASHEMVHQGVALVPEGRFVFADQSVEDNLILGGFVQAQRSGVAALRDD 120 Query: 115 FAAIEGLFPVFRSRLQQYAGTLSGGEQKMLLLARALMMRPALILLDEITEGLQPSVIDRL 174 + LFP + R Q AG+LSGGEQ+ML++AR LM P L+L+DE++ GL P ++D L Sbjct: 121 IDRMFQLFPRLKERRTQQAGSLSGGEQQMLVIARGLMSHPRLLLIDEVSLGLAPKILDFL 180 Query: 175 AHALLEERRQHGTTLLLVEQNVPFALQVADRYLILKQGEL 214 L++ RQ G ++LLVEQ AL V R +++ G + Sbjct: 181 FPVLVDLNRQ-GLSILLVEQIATRALAVTSRAYVMENGNV 219 >gi|134095636|ref|YP_001100711.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 241 Score = 126 bits (316), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/231 (35%), Positives = 124/231 (53%), Gaps = 14/231 (6%) Query: 1 MKQSALVMKDITSGYRASVVLRGLSLEIAQGEAVALLGKNGMGKSTLLKTVMGYL--GKQ 58 M + L + + Y ++G+ L++ QGE + L+G NG GK+T LK + G L + Sbjct: 1 MTTTVLKIAGLKVAYGGIQAVKGIDLDVRQGELITLIGANGAGKTTTLKAITGTLPECRV 60 Query: 59 SGAVHLHGSNITRMSPHRIARLGVAYAAQENALFAELSIADNLRLG-LTRPAL------F 111 G + G I + + R +A + +F +SI +NL +G TR Sbjct: 61 DGHIEYAGQAIKGLGSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRNDKQGIADDM 120 Query: 112 EERFAAIEGLFPVFRSRLQQYAGTLSGGEQKMLLLARALMMRPALILLDEITEGLQPSVI 171 E+ FA +FP + R Q AGTLSGGEQ+ML +ARALM P L+LLDE + GL P ++ Sbjct: 121 EKWFA----VFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPQLLLLDEPSMGLSPIMV 176 Query: 172 DRLAHALLEERRQHGTTLLLVEQNVPFALQVADRYLILKQGELVEEGDAKH 222 +++ + Q G T+LLVEQN ALQ A R +++ G + +GDA+ Sbjct: 177 EKIFEVIRSVAAQ-GITILLVEQNARLALQAAHRAYVMESGLITMQGDAQQ 226 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 114 bits (285), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 127/238 (53%), Gaps = 17/238 (7%) Query: 4 SALVMKDITSGYRASVVLRGLSLEIAQGEAVALLGKNGMGKSTLLKTVMGYLGKQSGAVH 63 S L++ + Y A V+R ++L++ GE + LLG NG GK+T ++G + +G + Sbjct: 3 SKLIVSGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRIE 62 Query: 64 LHGSNITRMSPHRIARLGVAYAAQENALFAELSIADNLR--LGLTR---PAL----FEER 114 L G +I+R H+ A+LG++Y QE ++F +LS+ DN+R L L R AL E+R Sbjct: 63 LDGVDISRQPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKALSKEQIEQR 122 Query: 115 FAAIEGLFPVFRSRLQQYAGTLSGGEQKMLLLARALMMRPALILLDEITEGLQPSV---I 171 + + + R Q A +LSGGE++ + +ARAL P +LLDE G+ P I Sbjct: 123 LDTLLADLQIEKLRENQ-ALSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIEI 181 Query: 172 DRLAHALLEERRQHGTTLLLVEQNVPFALQVADRYLILKQGELVEEGDAKHAGATETV 229 R+ L ++ G +L+ + NV L + DR I+ QG ++ G A E+V Sbjct: 182 QRIVRFL----KERGIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDIIADESV 235 >gi|134093662|ref|YP_001098737.1| branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 113 bits (283), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 127/224 (56%), Gaps = 4/224 (1%) Query: 5 ALVMKDITSGYRASVVLRGLSLEIAQGEAVALLGKNGMGKSTLLKTVMGYLGKQSGAVHL 64 +L ++++ + VLR +S+ I GE V L+G+NG GKST +++MG+ +SGA+ Sbjct: 2 SLALENVNVILAGNPVLRDISMHIEPGELVCLVGRNGAGKSTTFRSIMGFQPLKSGAIKW 61 Query: 65 HGSNITRMSPHRIARLGVAYAAQENALFAELSIADNLRLG-LTRPA--LFEERFAAIEGL 121 S I M H+I LG+ Y + + +F +L++ DN+ L TR + +ER + Sbjct: 62 KRSAINGMQTHKIVELGLGYTPEGSDVFGDLTVEDNIALPTWTRKSGRSAQERIDEAYAV 121 Query: 122 FPVFRSRLQQYAGTLSGGEQKMLLLARALMMRPALILLDEITEGLQPSVIDRLAHALLEE 181 FP + L + LSGGE+KM+ +ARAL + P L+LLDE EGL P++I ++ L Sbjct: 122 FPKLKQYLHRGGQQLSGGERKMVSIARALALDPELLLLDEAFEGLSPAIIPTISEGLQSI 181 Query: 182 RRQHGTTLLLVEQNVPFALQVADRYLILKQGELVEEGDAKHAGA 225 +Q G +LL E N ADR ++++GE+V EG A A Sbjct: 182 LKQ-GRGVLLAESNFYHLPPFADRLYVIERGEIVFEGTLAQAEA 224 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.136 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 393,421 Number of extensions: 14621 Number of successful extensions: 180 Number of sequences better than 1.0e-08: 47 Number of HSP's gapped: 135 Number of HSP's successfully gapped: 49 Length of query: 235 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 156 Effective length of database: 740,042 Effective search space: 115446552 Effective search space used: 115446552 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)