BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4514.p (603 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 188 8e-49 gi|134095637|ref|YP_001100712.1| high-affinity branched-chain am... 119 5e-28 gi|134093663|ref|YP_001098738.1| putative branched-chain amino a... 115 7e-27 gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 104 1e-23 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 104 1e-23 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 188 bits (477), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 162/571 (28%), Positives = 270/571 (47%), Gaps = 44/571 (7%) Query: 60 AIVAMTVDILWGYTGYLTFGQSAFFGIGAYAAGLVFTHVGFSGASVLLAIGVAVGATAVV 119 A+VA+ ++IL G TG ++ GQ+ F IGAY + ++ T GF +G + A ++ Sbjct: 45 ALVALGLNILTGLTGLVSLGQAGLFAIGAYTSAVLSTKFGF-------GLGTCIVAAMIL 97 Query: 120 AALAGWLSFY-----RGASPFFATVISLVLPIVLTQLLLSGGTWTGSSSGLTGYDS---F 171 +A G L Y RG + TVI++ I++ + + + TG +G++ + F Sbjct: 98 SAAFGVLLSYPTVRVRGV---YLTVITIAFGIIVENVAIEWSSLTGGPNGISSIPTPTMF 154 Query: 172 DFSID--AWYWISGGMLALAALGGWLLVRSDSGRLLAAIRDNEQRCSYLGINTALVKIAL 229 ++ ++++ + LA L + L++S GR + A+ +E +GIN ++++ Sbjct: 155 GLPLEDTKFFYVLAILFLLAFLLHYNLIKSRFGRAMRAVSQSETAARTVGINPIVMRMMS 214 Query: 230 LIAMAVLAGLAGLGYGAFSGVVAPELTGFALGTEFIIWVALGGRGSLWGPLVGAVLINVA 289 + A AG AG Y + V P+ F F++ V LGG G++ GP +GA ++ Sbjct: 215 FVIAAAFAGAAGATYAFLNQYVNPDTFRFDDSVRFLLMVILGGSGTVIGPALGATILTFI 274 Query: 290 TAYLSSSMPFVWQ-LILGATFIVVIVLLPQGL---VPLLLRPFGLGSASRHRPRLQECAD 345 YL S WQ G +V+ +P G+ V L + F R RP AD Sbjct: 275 PEYLQSFGE--WQRFAYGVLLALVMFGMPMGIVGTVNLWISRFSKSVNLRSRPWPCVNAD 332 Query: 346 S----KGDDPQ-VDAIHMRNVAKNFGPLKVLRGIDFTARAGELVGLIGPNGAGKTTLMRC 400 + K D + +++ FG L + +AG + +IGPNGAGK+T + C Sbjct: 333 TEALLKSDTAAGTTCLQTKDMTMAFGGLIANDKVSEVLKAGTVHSVIGPNGAGKSTFINC 392 Query: 401 MSDGAERSAGSVALCGSDIAKLPPQACVHLGLGRKFQNANIFESLTVAQCLRIARVRLQR 460 +S ++GS+ G +GL R FQN +F +T + + + R Sbjct: 393 VSGFYRPTSGSIEFMGQIATAKQSHQLARMGLARTFQNTELFGDMTCLENVLVGADSRYR 452 Query: 461 PALFKRADTLHLPPY----------ALHVMRATGLDGMLDSIAGDLSHGQQQALELAMVL 510 LF A L LP Y A ++ GLD + A +L G Q+ LE+A L Sbjct: 453 SGLF--ATLLRLPSYFHDERRYAAEARCLLEYVGLDDYAEEKARNLPFGHQRRLEIARAL 510 Query: 511 ALEPRVVLLDEPTAGLTKTERTQIGAVLSSLAFKYRLCCLLVEHDLDFVQQIATRIVVLH 570 A+ P+++LLDEP AGLT E + ++ +LA +++ LLVEH +D + ++ + VL Sbjct: 511 AMSPKLLLLDEPAAGLTHGEIEDLMKLIRNLA-SHQITVLLVEHHVDMIMAVSDHVTVLD 569 Query: 571 QGTIIMQGSFEEVVNSELVKTIYSGSTHATG 601 G +I G+ EV ++ V Y G+ G Sbjct: 570 YGKVIASGTVAEVRSNPAVIEAYFGTGETKG 600 >gi|134095637|ref|YP_001100712.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 260 Score = 119 bits (297), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 78/256 (30%), Positives = 126/256 (49%), Gaps = 10/256 (3%) Query: 351 PQVDAIHMRNVAKNFGPLKVLRGIDFTARAGELVGLIGPNGAGKTTLMRCMSDGAERSAG 410 PQ+ +++ NV+K FG L+ L ++ G++ GLIGPNGAGKTT ++ + +G Sbjct: 7 PQI-ILNIANVSKRFGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSG 65 Query: 411 SVALCGSDIAKLPPQACVHLGLGRKFQNANIFESLTVAQCLRIARVRLQRPALF------ 464 S L G + P G+ R FQN +F +T + + + R LF Sbjct: 66 SFELAGKAYSPSAPHLVAKAGIARTFQNIRLFGEMTALENVMVGRHVRTHQGLFGAVFHH 125 Query: 465 --KRADTLHLPPYALHVMRATGLDGMLDSIAGDLSHGQQQALELAMVLALEPRVVLLDEP 522 R + + A+ ++ G+ A LS+G Q+ LE+A LA +P+++ LDEP Sbjct: 126 KAARQEEAAIRARAMELLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALDEP 185 Query: 523 TAGLTKTERTQIGAVLSSLAFKYRLCCLLVEHDLDFVQQIATRIVVLHQGTIIMQGSFEE 582 AG+ TE+ + +L + + + LL+EHD+ V + RI VL G I +G + Sbjct: 186 AAGMNATEKLGLRELLVKIKAEGK-TILLIEHDVKLVMGLCDRITVLDYGKPIAEGVPAD 244 Query: 583 VVNSELVKTIYSGSTH 598 V + V Y G +H Sbjct: 245 VQKNPAVIEAYLGGSH 260 >gi|134093663|ref|YP_001098738.1| putative branched-chain amino acid ABC transporter, ATP-binding protein [Herminiimonas arsenicoxydans] Length = 255 Score = 115 bits (288), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 74/258 (28%), Positives = 124/258 (48%), Gaps = 31/258 (12%) Query: 359 RNVAKNFGPLKVLRGIDFTARAGELVGLIGPNGAGKTTLMRCMSDGAERSAGSVALCGSD 418 + +++++G L +D + GE V ++GPNGAGKTTL+ ++ + + G+V GS+ Sbjct: 11 QQISRHYGDFIALHNVDLSVSRGEFVSVVGPNGAGKTTLVNVLTGLHQPTTGNVHFNGSN 70 Query: 419 IAKLPPQACVHLGLGRKFQNANIFESLTVAQCLRIARV----------------RLQRPA 462 IA + GL R FQ +IF LTV + + ++ R Sbjct: 71 IAGVGAVDLATRGLARAFQLTSIFPELTVRETIAVSACSYLNMRWNGFGSLFGSRKVNDI 130 Query: 463 LFKRADTLHLPPYALHVMRATGLDGMLDSIAGDLSHGQQQALELAMVLALEPRVVLLDEP 522 + + AD L P+ LD+ L HG+++ L++A AL P+V+LLDEP Sbjct: 131 VVRTADAFGLAPW-------------LDTKGSSLPHGRRKLLDVASAFALHPKVMLLDEP 177 Query: 523 TAGLTKTERTQIGAVLSSLAFKYRL-CCLLVEHDLDFVQQIATRIVVLHQGTIIMQGSFE 581 TAG++ ++ + L A + +LVEHD+D V + +TRI+ + G I + Sbjct: 178 TAGVSTADKHGVMETLLRAAKHMGIEAIMLVEHDMDLVSRYSTRIIAMQAGKKIADLPRD 237 Query: 582 E-VVNSELVKTIYSGSTH 598 E N E++ + H Sbjct: 238 EFFANEEIISIVVGKGAH 255 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 125/242 (51%), Gaps = 19/242 (7%) Query: 363 KNFGPLKVLRGIDFTARAGELVGLIGPNGAGKTTLMRCMSDGAERSAGSVALCGSDIAKL 422 K++G +V+R + +GE++GL+GPNGAGKTT + AG + L G DI++ Sbjct: 12 KSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRIELDGVDISRQ 71 Query: 423 PPQACVHLGLGRKFQNANIFESLTVAQCLR----IARVR---LQRPALFKRADTLHLPPY 475 P LGL Q A++F L+V +R + RV L + + +R DTL L Sbjct: 72 PIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKALSKEQIEQRLDTL-LADL 130 Query: 476 ALHVMRATGLDGMLDSIAGDLSHGQQQALELAMVLALEPRVVLLDEPTAGLTKTERTQIG 535 + +R ++ A LS G+++ +E+A LA PR VLLDEP AG+ +I Sbjct: 131 QIEKLR--------ENQALSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIEIQ 182 Query: 536 AVLSSLAFKYR-LCCLLVEHDLDFVQQIATRIVVLHQGTIIMQGSFEEVVNSELVKTIYS 594 ++ L K R + L+ +H++ I R +++QG ++ G ++++ E V+ +Y Sbjct: 183 RIVRFL--KERGIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDIIADESVRRVYL 240 Query: 595 GS 596 G Sbjct: 241 GE 242 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 124/240 (51%), Gaps = 8/240 (3%) Query: 355 AIHMRNVAKNFGPLKVLRGIDFTARAGELVGLIGPNGAGKTTLMRCMSDGAERSAGSVAL 414 +I ++N+ K FG L + AGEL L+GP+G GKTTL+R ++ + G V L Sbjct: 2 SIEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLL 61 Query: 415 CGSDIAKLPPQACVHLGLGRKFQNANIFESLTVAQCLRIA-RVRLQRPALFKRADTLHLP 473 G D + + +G FQ+ +F+ +TV + + RVR PA + ++++ + Sbjct: 62 DGEDASA---RHVRERQVGFVFQHYALFKHMTVFENIAFGLRVR---PAATRPSESV-IK 114 Query: 474 PYALHVMRATGLDGMLDSIAGDLSHGQQQALELAMVLALEPRVVLLDEPTAGLTKTERTQ 533 ++ LD + D LS GQ+Q + LA LA+EPRV+LLDEP L R + Sbjct: 115 EKVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKE 174 Query: 534 IGAVLSSLAFKYRLCCLLVEHDLDFVQQIATRIVVLHQGTIIMQGSFEEVVNSELVKTIY 593 + L L + + + V HD + ++A +IV++++G + G+ ++V N+ +Y Sbjct: 175 LRRWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVY 234 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.325 0.140 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 897,476 Number of extensions: 31958 Number of successful extensions: 295 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 240 Number of HSP's successfully gapped: 46 Length of query: 603 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 516 Effective length of database: 713,682 Effective search space: 368259912 Effective search space used: 368259912 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)