BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4513.p (277 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093665|ref|YP_001098740.1| branched chain amino acid ABC t... 94 8e-21 gi|134095849|ref|YP_001100924.1| high-affinity branched-chain am... 77 9e-16 gi|134095639|ref|YP_001100714.1| high-affinity branched-chain am... 61 5e-11 >gi|134093665|ref|YP_001098740.1| branched chain amino acid ABC transporter permease [Herminiimonas arsenicoxydans] Length = 293 Score = 94.0 bits (232), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 84/284 (29%), Positives = 146/284 (51%), Gaps = 15/284 (5%) Query: 3 LLLDMLTTAAILFIVTAGLMMIFGVMKIVNFAHGALLTLGGYASYVVTHLQLDPWLG--- 59 +LL + AA+LF+V +GL +IFGV +I+N A G++ LG Y VT L L Sbjct: 7 ILLAGVFQAAVLFLVASGLQLIFGVQRIINLACGSIYALGAYFGIFVTSWALSKGLPVHL 66 Query: 60 WPLALL-TGIAVGMLVEGV----IVRRLYKRPLD-AILATWGLSIVIGQLIVMAFGRE-V 112 +P LL GI +G++ G+ ++R +Y RP +L T+ + ++ ++ +G + Sbjct: 67 FPFVLLGAGIVIGLI--GIPLERLIRTIYNRPESFQLLLTFAVMLMFQDVLRFFWGADPQ 124 Query: 113 QFVNAPLA-GTWAVMGVDYSAYRLVLVPLALGLGVLLTVLLNGTDFGVRTRAVIMNEELA 171 Q N + G + GV Y ++++ +A+ L + + L T G RA N E + Sbjct: 125 QLPNVSMTFGILSAFGVSMPTYNVMVIAVAVSLAIGMAYFLGKTKTGKILRATAENRETS 184 Query: 172 SSLGIHSGRVRFVTFSIGAGLGTLAGAMITPLSSVDPNMGLPWLISAFMLVMISG-HSML 230 +++GI+ RV + F++G LGT+ GA++ P ++ MG+ ++ AF +V+I G SM Sbjct: 185 AAMGINVTRVYVMVFTLGTMLGTIGGALVIPNAAASLEMGVELVVEAFAVVVIGGLGSMK 244 Query: 231 SLLLACVVFGAAQVLVSTYTNPVLGGLTIVILAAVTLRIRPKGL 274 + ++ G + L + Y P L I + L +P GL Sbjct: 245 GAAVGALIVGLIRALSAMYY-PEAEILAIYAIVLAVLIWKPAGL 287 >gi|134095849|ref|YP_001100924.1| high-affinity branched-chain amino acid ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 291 Score = 77.0 bits (188), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 81/287 (28%), Positives = 140/287 (48%), Gaps = 28/287 (9%) Query: 4 LLDMLTTAAILFIVTAGLMMIFGVMKIVNFAHGALLTLGGYASYVVTHLQLDPWLGWPLA 63 +L L+ AI +V G +++ + VNFAHG ++ +G + V L P++G PL+ Sbjct: 8 VLSGLSIGAIYSLVALGFYIMWSACRSVNFAHGDVMMVGAVLAVVSNDFGLSPYIGIPLS 67 Query: 64 LLTGIAVGMLVEGVIVRRLYKRPLDAI---LATWGLSIVIGQLIVMAFGREVQFVNAPLA 120 ++ + G+LVE VR Y + +AI L T + I++ + + FG + + +P Sbjct: 68 IVACVLYGVLVERFAVRP-YTKEANAIGWMLTTIAIGIMVESFVTIKFGSFARALPSP-- 124 Query: 121 GTWAVMGVDYS--------AYRLVLVPLALGLGVL-LTVLLNGTDFGVRTRAVIMNEELA 171 GVD + +L+PL + L ++ L V T G RAV N A Sbjct: 125 ------GVDKPITIFGAGIYLQEMLIPLFVILFMIGLEVFYRRTMLGRAMRAVAFNRIAA 178 Query: 172 SSLGIHSGRVRFVTFSIGAGLGTLAGAMITPLSSVDPNMGLPWLISAFML-VMISGHSML 230 +GI+ G V +F++ AGLG +AG +I P+ V MG+ + F + +M S S Sbjct: 179 GMMGINVGMVTSFSFALAAGLGGIAGILIGPIIQVSSTMGVLIGLKGFAVAIMASITSAR 238 Query: 231 SLLLACVVFGAAQVLVSTYTNPV---LGGLTIVILAAVTLRIRPKGL 274 +++ +++G + V Y + + G +I+IL L + P+GL Sbjct: 239 GVVITGLLYGVLEKFVEGYISSAAREVVGFSIMIL---VLLMFPQGL 282 >gi|134095639|ref|YP_001100714.1| high-affinity branched-chain amino acid ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 309 Score = 61.2 bits (147), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 81/294 (27%), Positives = 138/294 (46%), Gaps = 24/294 (8%) Query: 4 LLDMLTTAAILFIVTAGLMMIFGVMKIVNFAHGALLTLGGYASYVVTHL--QLDPWLGWP 61 +++ L ++ +V G M++GV+ ++NFAHG +L +G A + + + P L Sbjct: 8 IINGLVLGSMYALVALGYTMVYGVLNLINFAHGDVLMIGAMAGLTILKMLNTVAPDLPGI 67 Query: 62 LALLTGI--------AVGMLVEGVIVRRLYKRP-LDAILATWGLSIVIGQLIVMAFGRE- 111 + L+ I AV +L+E V RRL P L ++ G+SI++ +M +GR Sbjct: 68 VKLIIAILGAIPVCVAVNVLIERVAYRRLRNAPRLAPLITAIGVSILLQTFAMMIWGRSP 127 Query: 112 VQFVNAPLAGTWAVMGVDYSAYRLVLVPLALGLGVLLTVLLNGTDFGVRTRAVIMNEELA 171 + F ++G S +++L+ LA +LL +L+ T G RA N +A Sbjct: 128 LPFPQVMPGEPLHILGALISPTQVMLLILAAASMLLLALLIEKTKLGRAMRATAENPRVA 187 Query: 172 SSLGIHSGRVRFVTFSIGAGLGTLAGAM-ITPLSSVDPNMGLPWLISAFMLVMISG-HSM 229 +G+ S RV +TF IGA L +AG M SS MG + AF ++ G ++ Sbjct: 188 GLMGVDSNRVIVMTFVIGATLAAIAGVMWAANYSSAQFAMGFVPGLKAFSAAVLGGIGNI 247 Query: 230 LSLLLACVVFGAAQVLVSTYTNPVLGG---------LTIVILAAVTLRIRPKGL 274 +L ++ G + L + Y + GG V+L + L +RP G+ Sbjct: 248 YGAMLGGILLGLIESLGAGYIGDLTGGFLGSHYQDIFAFVVL-IIVLTLRPSGI 300 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.329 0.143 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 464,727 Number of extensions: 18162 Number of successful extensions: 124 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 117 Number of HSP's successfully gapped: 4 Length of query: 277 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 197 Effective length of database: 736,747 Effective search space: 145139159 Effective search space used: 145139159 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 128 (53.9 bits)